DrC_00028
- Cluster detail
- GO Category : Not Available
- Consensus Sequence :
BLASTX 2.2.13 [Nov-27-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DrC_00028 (571 letters) Database: Non-redundant SwissProt sequences 184,735 sequences; 68,354,980 total letters Score E Sequences producing significant alignments: (bits) Value sp|P27365|3BHS_MACMU 3 beta-hydroxysteroid dehydrogenase/de... 30 4.2 sp|Q9W4E2|NBEA_DROME Neurobeachin protein (Rugose protein) ... 29 7.2 sp|Q89A39|HFLK_BUCBP HflK protein 29 7.2 sp|Q9VGI8|BLM_DROME Bloom's syndrome protein homolog (Dmblm... 29 9.4 sp|P26439|3BHS2_HUMAN 3 beta-hydroxysteroid dehydrogenase/d... 29 9.4
>sp|P27365|3BHS_MACMU 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase (3Beta-HSD) [Includes: 3-beta-hydroxy-delta(5)-steroid dehydrogenase (3-beta-hydroxy-5-ene steroid dehydrogenase) (Progesterone reductase); Steroid delta-isomerase (Delta-5-3-ketosteroid isomerase)] Length = 373 Score = 30.0 bits (66), Expect = 4.2 Identities = 10/26 (38%), Positives = 18/26 (69%) Frame = +1 Query: 295 KWIINLAIVWWIGFIRLLVRMLFDPI 372 +W + LA+++WIGF+ +V L P+ Sbjct: 283 RWSLPLALMYWIGFLLEVVSFLLSPV 308
>sp|Q9W4E2|NBEA_DROME Neurobeachin protein (Rugose protein) (A-kinase anchor protein 550) (AKAP 550) (dAKAP550) Length = 3584 Score = 29.3 bits (64), Expect = 7.2 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = -3 Query: 479 FNQLELFNQIKLVCVHRFSYGNWDTN------EPHLCSHPHKMGSNNILTSSLIKPIHHT 318 + QL L + + + H+F+ W+ N P P GSN LT + +H T Sbjct: 3238 YPQLSLPSVVTVTAGHQFAVNRWNCNYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGT 3297
>sp|Q89A39|HFLK_BUCBP HflK protein Length = 417 Score = 29.3 bits (64), Expect = 7.2 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -2 Query: 543 IKKIFSNTRKILNNFHYNFVMF 478 ++KIFS+TRK+L N NF +F Sbjct: 323 MEKIFSHTRKVLTNSDNNFFLF 344
>sp|Q9VGI8|BLM_DROME Bloom's syndrome protein homolog (Dmblm) (Mutagen-sensitive protein 309) (RecQ helicase homolog) Length = 1487 Score = 28.9 bits (63), Expect = 9.4 Identities = 12/39 (30%), Positives = 20/39 (51%) Frame = +3 Query: 378 WMTAKMWFICVPVAIGKSVNTDEFNLIEQF*LIKT*QNY 494 W+T KM IC VA G ++ + + + L K+ + Y Sbjct: 1004 WLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGY 1042
>sp|P26439|3BHS2_HUMAN 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase type II (3Beta-HSD II) [Includes: 3-beta-hydroxy-delta(5)-steroid dehydrogenase (3-beta-hydroxy-5-ene steroid dehydrogenase) (Progesterone reductase); Steroid delta-isomerase (Delta-5-3-ketosteroid isomerase)] Length = 372 Score = 28.9 bits (63), Expect = 9.4 Identities = 10/26 (38%), Positives = 17/26 (65%) Frame = +1 Query: 295 KWIINLAIVWWIGFIRLLVRMLFDPI 372 +W + L +++WIGF+ +V L PI Sbjct: 282 RWSLPLTLMYWIGFLLEVVSFLLSPI 307
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,352,360
Number of Sequences: 369166
Number of extensions: 897574
Number of successful extensions: 2740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
Cluster detail
