Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_012_A08
(290 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q20471|YWRJ_CAEEL Putative casein kinase I F46F2.2 in ch... 29 3.8
sp|P27365|3BHS_MACMU 3 beta-hydroxysteroid dehydrogenase/de... 28 5.0
sp|O74787|CHO2_SCHPO Phosphatidylethanolamine N-methyltrans... 28 6.5
sp|P39364|SGCQ_ECOLI Putative sgc region protein sgcQ 28 8.5
sp|P59809|OXAA_CHLCV Inner membrane protein oxaA 28 8.5
>sp|Q20471|YWRJ_CAEEL Putative casein kinase I F46F2.2 in chromosome X
Length = 477
Score = 28.9 bits (63), Expect = 3.8
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +3
Query: 6 QQYQPMPQPHTAQPQVVYQTIIQNPVYGCLPV--NTVCPHCQAQIVT 140
QQ QP PH QPQ+ Q + P+ NT+ QAQ+ +
Sbjct: 94 QQAQPSQIPHPTQPQIDPTMFTQQSGFNWPPIDPNTIAALAQAQLAS 140
>sp|P27365|3BHS_MACMU 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase
(3Beta-HSD) [Includes: 3-beta-hydroxy-delta(5)-steroid
dehydrogenase (3-beta-hydroxy-5-ene steroid
dehydrogenase) (Progesterone reductase); Steroid
delta-isomerase (Delta-5-3-ketosteroid isomerase)]
Length = 373
Score = 28.5 bits (62), Expect = 5.0
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +2
Query: 155 KWIINLAIGWWIGFIRLLVRMLFDPI 232
+W + LA+ +WIGF+ +V L P+
Sbjct: 283 RWSLPLALMYWIGFLLEVVSFLLSPV 308
>sp|O74787|CHO2_SCHPO Phosphatidylethanolamine N-methyltransferase (PEAMT)
Length = 905
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 2 WTAISTYAATSHCTASSSLSNN 67
W+AI TSHC++ SLSN+
Sbjct: 746 WSAIDANGYTSHCSSIKSLSND 767
>sp|P39364|SGCQ_ECOLI Putative sgc region protein sgcQ
Length = 268
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -3
Query: 282 YGNWDTNEPHLCSHPHKMGSNNILTSSLIKP 190
+G WDTN H H++G+ + T I P
Sbjct: 129 FGVWDTNVGETIRHQHRIGAGEVKTLFNIVP 159
>sp|P59809|OXAA_CHLCV Inner membrane protein oxaA
Length = 794
Score = 27.7 bits (60), Expect = 8.5
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 6 QQYQPMPQPHTAQPQVVYQTIIQNPVYGCLPV 101
Q+Y+ P+ + +Y+T NP+ GCLP+
Sbjct: 616 QKYKKEPKRAQMEVMALYKTNKVNPITGCLPL 647
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,987,948
Number of Sequences: 369166
Number of extensions: 526757
Number of successful extensions: 1699
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1697
length of database: 68,354,980
effective HSP length: 66
effective length of database: 56,162,470
effective search space used: 1684874100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)