Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_L02
(571 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P27365|3BHS_MACMU 3 beta-hydroxysteroid dehydrogenase/de... 30 4.2
sp|Q9W4E2|NBEA_DROME Neurobeachin protein (Rugose protein) ... 29 7.2
sp|Q89A39|HFLK_BUCBP HflK protein 29 7.2
sp|Q9VGI8|BLM_DROME Bloom's syndrome protein homolog (Dmblm... 29 9.4
sp|P26439|3BHS2_HUMAN 3 beta-hydroxysteroid dehydrogenase/d... 29 9.4
>sp|P27365|3BHS_MACMU 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase
(3Beta-HSD) [Includes: 3-beta-hydroxy-delta(5)-steroid
dehydrogenase (3-beta-hydroxy-5-ene steroid
dehydrogenase) (Progesterone reductase); Steroid
delta-isomerase (Delta-5-3-ketosteroid isomerase)]
Length = 373
Score = 30.0 bits (66), Expect = 4.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 295 KWIINLAIVWWIGFIRLLVRMLFDPI 372
+W + LA+++WIGF+ +V L P+
Sbjct: 283 RWSLPLALMYWIGFLLEVVSFLLSPV 308
>sp|Q9W4E2|NBEA_DROME Neurobeachin protein (Rugose protein) (A-kinase anchor protein 550)
(AKAP 550) (dAKAP550)
Length = 3584
Score = 29.3 bits (64), Expect = 7.2
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 6/60 (10%)
Frame = -3
Query: 479 FNQLELFNQIKLVCVHRFSYGNWDTN------EPHLCSHPHKMGSNNILTSSLIKPIHHT 318
+ QL L + + + H+F+ W+ N P P GSN LT + +H T
Sbjct: 3238 YPQLSLPSVVTVTAGHQFAVNRWNCNYTASVQSPSYAESPQSPGSNQPLTIDPVLAVHGT 3297
>sp|Q89A39|HFLK_BUCBP HflK protein
Length = 417
Score = 29.3 bits (64), Expect = 7.2
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = -2
Query: 543 IKKIFSNTRKILNNFHYNFVMF 478
++KIFS+TRK+L N NF +F
Sbjct: 323 MEKIFSHTRKVLTNSDNNFFLF 344
>sp|Q9VGI8|BLM_DROME Bloom's syndrome protein homolog (Dmblm) (Mutagen-sensitive protein
309) (RecQ helicase homolog)
Length = 1487
Score = 28.9 bits (63), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 378 WMTAKMWFICVPVAIGKSVNTDEFNLIEQF*LIKT*QNY 494
W+T KM IC VA G ++ + + + L K+ + Y
Sbjct: 1004 WLTGKMRVICATVAFGMGIDKPDVRFVLHYSLPKSIEGY 1042
>sp|P26439|3BHS2_HUMAN 3 beta-hydroxysteroid dehydrogenase/delta 5-->4-isomerase type II
(3Beta-HSD II) [Includes:
3-beta-hydroxy-delta(5)-steroid dehydrogenase
(3-beta-hydroxy-5-ene steroid dehydrogenase)
(Progesterone reductase); Steroid delta-isomerase
(Delta-5-3-ketosteroid isomerase)]
Length = 372
Score = 28.9 bits (63), Expect = 9.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 295 KWIINLAIVWWIGFIRLLVRMLFDPI 372
+W + L +++WIGF+ +V L PI
Sbjct: 282 RWSLPLTLMYWIGFLLEVVSFLLSPI 307
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,352,360
Number of Sequences: 369166
Number of extensions: 897574
Number of successful extensions: 2740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2738
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4177115900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)