Planaria EST Database

DrC_00018

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00018
         (456 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O42387|RS24_FUGRU  40S ribosomal protein S24                   162   3e-40
sp|P62850|RS24_RAT  40S ribosomal protein S24 >gi|51338647|s...   160   1e-39
sp|Q9W6X9|RS24_ORYLA  40S ribosomal protein S24                   159   2e-39
sp|P02377|RS24_XENLA  40S ribosomal protein S24 (S19)             159   3e-39
sp|Q962Q6|RS24_SPOFR  40S ribosomal protein S24                   156   2e-38
sp|Q90YQ0|RS24_ICTPU  40S ribosomal protein S24                   155   5e-38
sp|Q9SS17|RS24_ARATH  40S ribosomal protein S24                   133   2e-31
sp|O59865|RS24B_SCHPO  40S ribosomal protein S24-B                125   3e-29
sp|P14249|RS24_RHIRA  40S ribosomal protein S24                   124   1e-28
sp|O13784|RS24A_SCHPO  40S ribosomal protein S24-A                120   1e-27

>sp|O42387|RS24_FUGRU 40S ribosomal protein S24
          Length = 132

 Score =  162 bits (410), Expect = 3e-40
 Identities = 75/96 (78%), Positives = 87/96 (90%)
 Frame = +3

Query: 36  TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
           T+ V+TRKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F FRT 
Sbjct: 4   TVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63

Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
           FGGG+++GFA++YD+LDYAKK EPKHRL RHG+  K
Sbjct: 64  FGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEK 99

>sp|P62850|RS24_RAT 40S ribosomal protein S24
 sp|P62849|RS24_MOUSE 40S ribosomal protein S24
 sp|P62848|RS24_MESAU 40S ribosomal protein S24 (Ribosomal protein S19)
 sp|P62847|RS24_HUMAN 40S ribosomal protein S24
          Length = 133

 Score =  160 bits (405), Expect = 1e-39
 Identities = 72/96 (75%), Positives = 87/96 (90%)
 Frame = +3

Query: 36  TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
           T+ ++TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDV+F F FRT+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
           FGGG+++GF +IYD+LDYAKK EPKHRL RHG+  K
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99

>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24
          Length = 132

 Score =  159 bits (403), Expect = 2e-39
 Identities = 73/96 (76%), Positives = 86/96 (89%)
 Frame = +3

Query: 36  TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
           T+ ++TRKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F FRT 
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63

Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
           FGGG+++GFA++YD+LDYAKK EPKHRL  HG+  K
Sbjct: 64  FGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEK 99

>sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19)
          Length = 132

 Score =  159 bits (402), Expect = 3e-39
 Identities = 71/96 (73%), Positives = 87/96 (90%)
 Frame = +3

Query: 36  TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
           T+ ++TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDV+F F FRT+
Sbjct: 4   TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63

Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
           FGGG+++GF +IYD+LDYAKK EPKHRL +HG+  K
Sbjct: 64  FGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEK 99

>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24
          Length = 132

 Score =  156 bits (394), Expect = 2e-38
 Identities = 75/102 (73%), Positives = 84/102 (82%)
 Frame = +3

Query: 30  EMTIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFR 209
           E T  ++TRKF+TN+LL RKQMV DVLHPG+ TV KTEIRE LAKMYK TPDVVF F F+
Sbjct: 3   EGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFK 62

Query: 210 TNFGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSKDTST 335
           TNFGGG+S+GFALIYDTLD AKKFEPKHRL RHG+  K   T
Sbjct: 63  TNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPT 104

>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24
          Length = 131

 Score =  155 bits (391), Expect = 5e-38
 Identities = 70/96 (72%), Positives = 87/96 (90%)
 Frame = +3

Query: 36  TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
           ++ ++TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F F+T 
Sbjct: 4   SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQ 63

Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
           FGGG+++GFA++YD+LDYAKK EPK+RL RHG+  K
Sbjct: 64  FGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEK 99

>sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24
          Length = 133

 Score =  133 bits (334), Expect = 2e-31
 Identities = 60/99 (60%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
 Frame = +3

Query: 30  EMTIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTT-PDVVFAFHF 206
           E  + ++TRKF+TN+LL RKQ V+DVLHPGRA V K E++E LA+MY+   P+ +F F F
Sbjct: 3   EKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 62

Query: 207 RTNFGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
           RT+FGGG+SSGF LIYDT++ AKKFEPK+RL+R+G+ +K
Sbjct: 63  RTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTK 101

>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B
          Length = 134

 Score =  125 bits (315), Expect = 3e-29
 Identities = 59/91 (64%), Positives = 75/91 (82%)
 Frame = +3

Query: 39  IVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNF 218
           + ++TRKF+TN+LLQRKQMVVD+LHPG+A + K EIRE LA+MYKT  + V AF  RT+F
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHF 64

Query: 219 GGGRSSGFALIYDTLDYAKKFEPKHRLLRHG 311
           GGGRS+GFALIYD+ +  KKFEP +RL+R G
Sbjct: 65  GGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95

>sp|P14249|RS24_RHIRA 40S ribosomal protein S24
          Length = 148

 Score =  124 bits (311), Expect = 1e-28
 Identities = 56/97 (57%), Positives = 75/97 (77%)
 Frame = +3

Query: 24  KIEMTIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFH 203
           + +  + ++TRKFLTN+LLQRKQMVVDV+HPG A V K E+R  + KMYK   +VV  F 
Sbjct: 19  RADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVVSVFG 78

Query: 204 FRTNFGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGI 314
           F+T+FGGG+++GFALIYD ++  K FEPKHRL+R G+
Sbjct: 79  FKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGL 115

>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A
          Length = 134

 Score =  120 bits (301), Expect = 1e-27
 Identities = 54/91 (59%), Positives = 73/91 (80%)
 Frame = +3

Query: 39  IVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNF 218
           + ++TRKF+TN+LLQRKQMVVD+LHPG+A + K ++RE L +MYKT    V AF  RT++
Sbjct: 5   VTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHY 64

Query: 219 GGGRSSGFALIYDTLDYAKKFEPKHRLLRHG 311
           GGGR++GFALIYD ++  KKFEP +RL+R G
Sbjct: 65  GGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,355,900
Number of Sequences: 369166
Number of extensions: 887270
Number of successful extensions: 2481
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2480
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2484837250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00018

  1. Dr_sW_001_H07
  2. Dr_sW_009_D07
  3. Dr_sW_006_J22