Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H07
(452 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42387|RS24_FUGRU 40S ribosomal protein S24 162 3e-40
sp|P62850|RS24_RAT 40S ribosomal protein S24 >gi|51338647|s... 160 1e-39
sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 159 2e-39
sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19) 159 3e-39
sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 156 2e-38
sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 155 5e-38
sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24 133 2e-31
sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B 125 3e-29
sp|P14249|RS24_RHIRA 40S ribosomal protein S24 124 1e-28
sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A 120 1e-27
>sp|O42387|RS24_FUGRU 40S ribosomal protein S24
Length = 132
Score = 162 bits (410), Expect = 3e-40
Identities = 75/96 (78%), Positives = 87/96 (90%)
Frame = +3
Query: 36 TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
T+ V+TRKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F FRT
Sbjct: 4 TVTVRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63
Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
FGGG+++GFA++YD+LDYAKK EPKHRL RHG+ K
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKHRLARHGLFEK 99
>sp|P62850|RS24_RAT 40S ribosomal protein S24
sp|P62849|RS24_MOUSE 40S ribosomal protein S24
sp|P62848|RS24_MESAU 40S ribosomal protein S24 (Ribosomal protein S19)
sp|P62847|RS24_HUMAN 40S ribosomal protein S24
Length = 133
Score = 160 bits (405), Expect = 1e-39
Identities = 72/96 (75%), Positives = 87/96 (90%)
Frame = +3
Query: 36 TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
T+ ++TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDV+F F FRT+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
FGGG+++GF +IYD+LDYAKK EPKHRL RHG+ K
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24
Length = 132
Score = 159 bits (403), Expect = 2e-39
Identities = 73/96 (76%), Positives = 86/96 (89%)
Frame = +3
Query: 36 TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
T+ ++TRKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F FRT
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQ 63
Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
FGGG+++GFA++YD+LDYAKK EPKHRL HG+ K
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKHRLATHGLYEK 99
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19)
Length = 132
Score = 159 bits (402), Expect = 3e-39
Identities = 71/96 (73%), Positives = 87/96 (90%)
Frame = +3
Query: 36 TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
T+ ++TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDV+F F FRT+
Sbjct: 4 TVTIRTRKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTH 63
Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
FGGG+++GF +IYD+LDYAKK EPKHRL +HG+ K
Sbjct: 64 FGGGKTTGFGMIYDSLDYAKKNEPKHRLAKHGLYEK 99
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24
Length = 132
Score = 156 bits (394), Expect = 2e-38
Identities = 75/102 (73%), Positives = 84/102 (82%)
Frame = +3
Query: 30 EMTIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFR 209
E T ++TRKF+TN+LL RKQMV DVLHPG+ TV KTEIRE LAKMYK TPDVVF F F+
Sbjct: 3 EGTATIRTRKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFK 62
Query: 210 TNFGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSKDTST 335
TNFGGG+S+GFALIYDTLD AKKFEPKHRL RHG+ K T
Sbjct: 63 TNFGGGKSTGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPT 104
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24
Length = 131
Score = 155 bits (391), Expect = 5e-38
Identities = 70/96 (72%), Positives = 87/96 (90%)
Frame = +3
Query: 36 TIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTN 215
++ ++TRKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F F+T
Sbjct: 4 SVTLRTRKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQ 63
Query: 216 FGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
FGGG+++GFA++YD+LDYAKK EPK+RL RHG+ K
Sbjct: 64 FGGGKTTGFAMVYDSLDYAKKNEPKYRLARHGLYEK 99
>sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24
Length = 133
Score = 133 bits (334), Expect = 2e-31
Identities = 60/99 (60%), Positives = 81/99 (81%), Gaps = 1/99 (1%)
Frame = +3
Query: 30 EMTIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTT-PDVVFAFHF 206
E + ++TRKF+TN+LL RKQ V+DVLHPGRA V K E++E LA+MY+ P+ +F F F
Sbjct: 3 EKAVTIRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKF 62
Query: 207 RTNFGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 323
RT+FGGG+SSGF LIYDT++ AKKFEPK+RL+R+G+ +K
Sbjct: 63 RTHFGGGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTK 101
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B
Length = 134
Score = 125 bits (315), Expect = 3e-29
Identities = 59/91 (64%), Positives = 75/91 (82%)
Frame = +3
Query: 39 IVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNF 218
+ ++TRKF+TN+LLQRKQMVVD+LHPG+A + K EIRE LA+MYKT + V AF RT+F
Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHF 64
Query: 219 GGGRSSGFALIYDTLDYAKKFEPKHRLLRHG 311
GGGRS+GFALIYD+ + KKFEP +RL+R G
Sbjct: 65 GGGRSTGFALIYDSTESMKKFEPHYRLVRVG 95
>sp|P14249|RS24_RHIRA 40S ribosomal protein S24
Length = 148
Score = 124 bits (311), Expect = 1e-28
Identities = 56/97 (57%), Positives = 75/97 (77%)
Frame = +3
Query: 24 KIEMTIVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFH 203
+ + + ++TRKFLTN+LLQRKQMVVDV+HPG A V K E+R + KMYK +VV F
Sbjct: 19 RADAAVTIRTRKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVVSVFG 78
Query: 204 FRTNFGGGRSSGFALIYDTLDYAKKFEPKHRLLRHGI 314
F+T+FGGG+++GFALIYD ++ K FEPKHRL+R G+
Sbjct: 79 FKTHFGGGKTTGFALIYDNVEALKNFEPKHRLVRIGL 115
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A
Length = 134
Score = 120 bits (301), Expect = 1e-27
Identities = 54/91 (59%), Positives = 73/91 (80%)
Frame = +3
Query: 39 IVVKTRKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNF 218
+ ++TRKF+TN+LLQRKQMVVD+LHPG+A + K ++RE L +MYKT V AF RT++
Sbjct: 5 VTIRTRKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHY 64
Query: 219 GGGRSSGFALIYDTLDYAKKFEPKHRLLRHG 311
GGGR++GFALIYD ++ KKFEP +RL+R G
Sbjct: 65 GGGRTTGFALIYDDVEAMKKFEPHYRLVRVG 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,115,758
Number of Sequences: 369166
Number of extensions: 957347
Number of successful extensions: 2720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2719
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2435140505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)