Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_006_J22
(403 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O42387|RS24_FUGRU 40S ribosomal protein S24 155 4e-38
sp|P62850|RS24_RAT 40S ribosomal protein S24 >gi|51338647|s... 153 1e-37
sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24 152 2e-37
sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19) 152 2e-37
sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24 150 9e-37
sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24 150 1e-36
sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24 126 1e-29
sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B 120 8e-28
sp|P14249|RS24_RHIRA 40S ribosomal protein S24 118 4e-27
sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A 115 3e-26
>sp|O42387|RS24_FUGRU 40S ribosomal protein S24
Length = 132
Score = 155 bits (391), Expect = 4e-38
Identities = 72/90 (80%), Positives = 82/90 (91%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F FRT FGGG++
Sbjct: 10 RKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQFGGGKT 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGIGSK 270
+GFA++YD+LDYAKK EPKHRL RHG+ K
Sbjct: 70 TGFAMVYDSLDYAKKNEPKHRLARHGLFEK 99
>sp|P62850|RS24_RAT 40S ribosomal protein S24
sp|P62849|RS24_MOUSE 40S ribosomal protein S24
sp|P62848|RS24_MESAU 40S ribosomal protein S24 (Ribosomal protein S19)
sp|P62847|RS24_HUMAN 40S ribosomal protein S24
Length = 133
Score = 153 bits (387), Expect = 1e-37
Identities = 70/90 (77%), Positives = 82/90 (91%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDV+F F FRT+FGGG++
Sbjct: 10 RKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKT 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGIGSK 270
+GF +IYD+LDYAKK EPKHRL RHG+ K
Sbjct: 70 TGFGMIYDSLDYAKKNEPKHRLARHGLYEK 99
>sp|Q9W6X9|RS24_ORYLA 40S ribosomal protein S24
Length = 132
Score = 152 bits (385), Expect = 2e-37
Identities = 71/90 (78%), Positives = 81/90 (90%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMVVDVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F FRT FGGG++
Sbjct: 10 RKFMTNRLLQRKQMVVDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFRTQFGGGKT 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGIGSK 270
+GFA++YD+LDYAKK EPKHRL HG+ K
Sbjct: 70 TGFAMVYDSLDYAKKNEPKHRLATHGLYEK 99
>sp|P02377|RS24_XENLA 40S ribosomal protein S24 (S19)
Length = 132
Score = 152 bits (384), Expect = 2e-37
Identities = 69/90 (76%), Positives = 82/90 (91%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDV+F F FRT+FGGG++
Sbjct: 10 RKFMTNRLLQRKQMVIDVLHPGKATVPKTEIREKLAKMYKTTPDVIFVFGFRTHFGGGKT 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGIGSK 270
+GF +IYD+LDYAKK EPKHRL +HG+ K
Sbjct: 70 TGFGMIYDSLDYAKKNEPKHRLAKHGLYEK 99
>sp|Q90YQ0|RS24_ICTPU 40S ribosomal protein S24
Length = 131
Score = 150 bits (379), Expect = 9e-37
Identities = 69/90 (76%), Positives = 82/90 (91%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMV+DVLHPG+ATVPKTEIRE LAKMYKTTPDVVF F F+T FGGG++
Sbjct: 10 RKFMTNRLLQRKQMVLDVLHPGKATVPKTEIREKLAKMYKTTPDVVFVFGFKTQFGGGKT 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGIGSK 270
+GFA++YD+LDYAKK EPK+RL RHG+ K
Sbjct: 70 TGFAMVYDSLDYAKKNEPKYRLARHGLYEK 99
>sp|Q962Q6|RS24_SPOFR 40S ribosomal protein S24
Length = 132
Score = 150 bits (378), Expect = 1e-36
Identities = 72/94 (76%), Positives = 79/94 (84%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LL RKQMV DVLHPG+ TV KTEIRE LAKMYK TPDVVF F F+TNFGGG+S
Sbjct: 11 RKFMTNRLLARKQMVCDVLHPGKPTVSKTEIREKLAKMYKVTPDVVFVFGFKTNFGGGKS 70
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGIGSKDTST 282
+GFALIYDTLD AKKFEPKHRL RHG+ K T
Sbjct: 71 TGFALIYDTLDLAKKFEPKHRLARHGLYEKKRPT 104
>sp|Q9SS17|RS24_ARATH 40S ribosomal protein S24
Length = 133
Score = 126 bits (317), Expect = 1e-29
Identities = 58/91 (63%), Positives = 76/91 (83%), Gaps = 1/91 (1%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTT-PDVVFAFHFRTNFGGGR 177
RKF+TN+LL RKQ V+DVLHPGRA V K E++E LA+MY+ P+ +F F FRT+FGGG+
Sbjct: 11 RKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFGGGK 70
Query: 178 SSGFALIYDTLDYAKKFEPKHRLLRHGIGSK 270
SSGF LIYDT++ AKKFEPK+RL+R+G+ +K
Sbjct: 71 SSGFGLIYDTVESAKKFEPKYRLIRNGLDTK 101
>sp|O59865|RS24B_SCHPO 40S ribosomal protein S24-B
Length = 134
Score = 120 bits (302), Expect = 8e-28
Identities = 58/86 (67%), Positives = 71/86 (82%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMVVD+LHPG+A + K EIRE LA+MYKT + V AF RT+FGGGRS
Sbjct: 10 RKFMTNRLLQRKQMVVDILHPGKANLSKNEIREKLAQMYKTDSECVQAFGLRTHFGGGRS 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHG 258
+GFALIYD+ + KKFEP +RL+R G
Sbjct: 70 TGFALIYDSTESMKKFEPHYRLVRVG 95
>sp|P14249|RS24_RHIRA 40S ribosomal protein S24
Length = 148
Score = 118 bits (296), Expect = 4e-27
Identities = 55/87 (63%), Positives = 69/87 (79%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKFLTN+LLQRKQMVVDV+HPG A V K E+R + KMYK +VV F F+T+FGGG++
Sbjct: 29 RKFLTNRLLQRKQMVVDVIHPGLANVSKDELRSKIGKMYKADKEVVSVFGFKTHFGGGKT 88
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHGI 261
+GFALIYD ++ K FEPKHRL+R G+
Sbjct: 89 TGFALIYDNVEALKNFEPKHRLVRIGL 115
>sp|O13784|RS24A_SCHPO 40S ribosomal protein S24-A
Length = 134
Score = 115 bits (288), Expect = 3e-26
Identities = 53/86 (61%), Positives = 69/86 (80%)
Frame = +1
Query: 1 RKFLTNKLLQRKQMVVDVLHPGRATVPKTEIREHLAKMYKTTPDVVFAFHFRTNFGGGRS 180
RKF+TN+LLQRKQMVVD+LHPG+A + K ++RE L +MYKT V AF RT++GGGR+
Sbjct: 10 RKFMTNRLLQRKQMVVDILHPGKANISKNDLREKLGQMYKTDASAVQAFGLRTHYGGGRT 69
Query: 181 SGFALIYDTLDYAKKFEPKHRLLRHG 258
+GFALIYD ++ KKFEP +RL+R G
Sbjct: 70 TGFALIYDDVEAMKKFEPHYRLVRVG 95
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,891,751
Number of Sequences: 369166
Number of extensions: 759841
Number of successful extensions: 2184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2183
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)