Planaria EST Database

DrC_00017

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00017
         (1008 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14342|YB3C_SCHPO  Hypothetical protein C2F12.12c in chro...   121   3e-27
sp|P40480|HOS4_YEAST  Protein HOS4                                 37   0.089
sp|Q61624|ZN148_MOUSE  Zinc finger protein 148 (Zinc finger ...    35   0.44 
sp|Q62806|ZN148_RAT  Zinc finger protein 148 (Zinc finger DN...    34   0.75 
sp|Q9UQR1|ZN148_HUMAN  Zinc finger protein 148 (Zinc finger ...    33   1.3  
sp|Q07283|TRHY_HUMAN  Trichohyalin                                 33   1.3  
sp|O22921|WRK25_ARATH  Probable WRKY transcription factor 25...    33   1.3  
sp|P42349|Y1242_SYNY3  Hypothetical methyltransferase sll124...    32   2.2  
sp|Q8BRB7|MYST4_MOUSE  Histone acetyltransferase MYST4 (MYST...    32   2.2  
sp|Q9H6D3|XKR8_HUMAN  XK-related protein 8                         32   2.9  

>sp|O14342|YB3C_SCHPO Hypothetical protein C2F12.12c in chromosome II
          Length = 517

 Score =  121 bits (304), Expect = 3e-27
 Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 11/129 (8%)
 Frame = +3

Query: 606 RKPRFLNRVNTGFDWNKYNQTHYDMDNPPPKIVQGYKFNILYPDLIDKTKTPTFEL---- 773
           +KP + NRV  GF+WN YNQ H++  +PPPK VQGY+FN+ YPDLI   + PT+ +    
Sbjct: 389 KKPHYFNRVLLGFEWNSYNQAHFNEAHPPPKAVQGYRFNVFYPDLIGTGRAPTYRIERTR 448

Query: 774 ----TPCAD-DDQYAIITFKAGPPYEDIAFKIVNREWETSER--HGYKCQFYRDMLQLYF 932
               +   D  D   II F AG PY+DIAF IV+++W+ S +  HG+K  F   +L L+F
Sbjct: 449 RKNKSDTTDLQDDVCIIRFIAGEPYQDIAFSIVDKDWDYSAKRDHGFKSSFDNGVLSLHF 508

Query: 933 HFKRYRYRK 959
            FK+  +R+
Sbjct: 509 RFKKLHHRR 517

>sp|P40480|HOS4_YEAST Protein HOS4
          Length = 1083

 Score = 37.0 bits (84), Expect = 0.089
 Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
 Frame = +3

Query: 207  KLKHEQGLPVEPLFPSAVVQKEEKVEAKATNSKKTEFILEREEYDHHRYSPVLLSTEEIG 386
            KLK    L +EP  P      E     + T +++   + E EEY   R        +E+ 
Sbjct: 765  KLKSISPLSMEPHSPKKAKSVEISKIHEETAAEREARLKEEEEYRKKRLEKKRKKEQELL 824

Query: 387  DEAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIKLVQEGHEKGESDFNEQFAL 566
             +       LAED+ K++E   K+       K+ + + L K   E   K E     +  +
Sbjct: 825  QK-------LAEDEKKRIEEQEKQ-------KVLEMERLEKATLEKARKME----REKEM 866

Query: 567  EEQSFLWS--DKYRPRKPRFLNRVNTGFDWNKYNQTHYDMDNPPPKIVQGYKFNILYP-- 734
            EE S+  +  D Y P   + +N  N   D+ ++   +Y +D    K V   +  IL    
Sbjct: 867  EEISYRRAVRDLY-PLGLKIIN-FNDKLDYKRFLPLYYFVDEKNDKFVLDLQVMILLKDI 924

Query: 735  DLIDKTKTPTFELTP 779
            DL+ K   PT E  P
Sbjct: 925  DLLSKDNQPTSEKIP 939

>sp|Q61624|ZN148_MOUSE Zinc finger protein 148 (Zinc finger DNA binding protein 89)
           (Transcription factor ZBP-89) (G-rich box-binding
           protein) (Beta enolase repressor factor 1)
           (Transcription factor BFCOL1)
          Length = 794

 Score = 34.7 bits (78), Expect = 0.44
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
 Frame = +3

Query: 120 EYFCKLANVLIAKKRLQERHSNNLRLKLIK-----LKHEQGLPVEPLFPSAVVQKEEKVE 284
           +YF +   VL  K+   E H   L    IK      + + G    P   S   +K +K E
Sbjct: 262 QYFSRTDRVLKHKRMCHENHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTE 321

Query: 285 AKATNSKKTEFILEREEY--DHHRYSPVLLSTEEIGDE 392
            K++   K E +L++ +   D + Y P+  S+ ++ DE
Sbjct: 322 KKSSGMDK-ESVLDKSDLKKDKNDYLPLYSSSTKVKDE 358

>sp|Q62806|ZN148_RAT Zinc finger protein 148 (Zinc finger DNA binding protein 89)
           (Transcription factor ZBP-89)
          Length = 794

 Score = 33.9 bits (76), Expect = 0.75
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
 Frame = +3

Query: 120 EYFCKLANVLIAKKRLQERHSNNLRLKLIK-----LKHEQGLPVEPLFPSAVVQKEEKVE 284
           +YF +   VL  K+   E H   L    IK      + + G    P   S   +K +K E
Sbjct: 262 QYFSRTDRVLKHKRMCHENHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKPE 321

Query: 285 AKATNSKKTEFILEREE--YDHHRYSPVLLSTEEIGDE 392
            K++   K E +L++ +   D + Y P+  S+ ++ DE
Sbjct: 322 KKSSGMDK-ESVLDKSDTKKDRNDYLPLYSSSTKVKDE 358

>sp|Q9UQR1|ZN148_HUMAN Zinc finger protein 148 (Zinc finger DNA binding protein 89)
           (Transcription factor ZBP-89)
          Length = 794

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
 Frame = +3

Query: 120 EYFCKLANVLIAKKRLQERHSNNLRLKLIK-----LKHEQGLPVEPLFPSAVVQKEEKVE 284
           +YF +   VL  K+   E H   L    IK      + + G    P   S   +K +K E
Sbjct: 262 QYFSRTDRVLKHKRMCHENHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTE 321

Query: 285 AKATNSKKTEFILEREEY--DHHRYSPVLLSTEEIGDE 392
            K++   K E  L++ +   D + Y P+  S+ ++ DE
Sbjct: 322 KKSSGMDK-ESALDKSDLKKDKNDYLPLYSSSTKVKDE 358

>sp|Q07283|TRHY_HUMAN Trichohyalin
          Length = 1898

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 36/154 (23%), Positives = 70/154 (45%)
 Frame = +3

Query: 159 KRLQERHSNNLRLKLIKLKHEQGLPVEPLFPSAVVQKEEKVEAKATNSKKTEFILEREEY 338
           KR QE   + L LK  + + +Q L  E         +EE++E +    +     LE+EE 
Sbjct: 587 KREQEERRDQL-LKREEERRQQRLKRE---------QEERLEQRLKREEVER--LEQEER 634

Query: 339 DHHRYSPVLLSTEEIGDEAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIKLVQ 518
              R     L  EE  +E    ++   E ++++ E +R++  +    ++ +E+E  +L Q
Sbjct: 635 RDER-----LKREEPEEERRHELLKSEEQEERRHEQLRREQQERREQRLKREEEEERLEQ 689

Query: 519 EGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRF 620
               + E +  EQ   EE+     ++ + R P++
Sbjct: 690 RLKREHEEERREQELAEEEQEQARERIKSRIPKW 723


 Score = 30.8 bits (68), Expect = 6.4
 Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
 Frame = +3

Query: 156  KKRLQERHSNNLRLKLIKLKHEQGLPVEPLFPSAVVQKEEKVEAKATNSKKTEFIL--ER 329
            K+R QER     + K ++ K EQ L  EP       ++E+K   +    ++ E +L  ER
Sbjct: 967  KRRRQERERQYRKDKKLQQKEEQLLGEEP-EKRRRQEREKKYREEEELQQEEEQLLREER 1025

Query: 330  EEYDHHRYSPVLLSTEEIGDEAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIK 509
            E+     +       +E+  E  E  +   E + ++L+   +++ +    ++ QE+E + 
Sbjct: 1026 EKRRRQEWERQYRKKDELQQE--EEQLLREEREKRRLQERERQYRE--EEELQQEEEQL- 1080

Query: 510  LVQEGHEKGESDFNEQFALEEQ 575
            L +E   +   +   Q+  EE+
Sbjct: 1081 LGEERETRRRQELERQYRKEEE 1102

>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25)
          Length = 393

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
 Frame = +3

Query: 519 EGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRFL--NRVNTGFDWNKYNQTHYDMDNPP 692
           + HEK +     + A +  +  +  + + + P ++     N G+ W KY Q        P
Sbjct: 126 QDHEKKQEMIPNEIATQNNNQSFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENP 185

Query: 693 PKIVQGYKFNILYPDLIDKTKTPTFELTPCADDDQYAIITFKAG 824
                   F   YPD + K      ++   A D Q   I +K G
Sbjct: 186 RSY-----FKCTYPDCVSK------KIVETASDGQITEIIYKGG 218

>sp|P42349|Y1242_SYNY3 Hypothetical methyltransferase sll1242 (ORF N)
          Length = 536

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +3

Query: 792 DQYAIITFKAGPPYEDIAFKIVNREWETSERHGYKCQFYRDMLQL 926
           +Q  ++ F    P EDIA + V   WE  + HGY  + YR  L+L
Sbjct: 380 NQTTLMNFIPTRPLEDIANEYVEAFWELYDPHGYLDRNYRCFLKL 424

>sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
            SAS2 and TIP60 protein 4) (Querkopf protein)
          Length = 1872

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
 Frame = +3

Query: 213  KHEQGLPVEP-LFPSAVVQKEEKVEAKATNSKKTEFILEREEYDHHRYSPVLLSTEEIGD 389
            + E G+PV P   P   V +E+ +  +    ++ E   EREE +           EE+  
Sbjct: 1128 REETGIPVSPHKSPGGKVDEEDLIRGEEEGEEEGEEEGEREEQEEE---------EEVTT 1178

Query: 390  EAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIKLVQEGHEKGESD 545
            E   +     E+ + ++   ++  +  G H+ D+++E      E H+  + D
Sbjct: 1179 EKDLDGAKSKENPEPEISMEKEDPVHLGDHEEDEDEEEEPSHNEDHDADDED 1230

>sp|Q9H6D3|XKR8_HUMAN XK-related protein 8
          Length = 395

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 435 FYHHLPLNKSHFRWLHRRFLQWITKPDCIDGDRTLLSP 322
           F+  L L   ++ WLH     W   PD +DG R+LLSP
Sbjct: 327 FFLGLALRLVYYHWLHPSCC-WKPDPDQVDGARSLLSP 363

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,858,743
Number of Sequences: 369166
Number of extensions: 2204264
Number of successful extensions: 6380
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6374
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10718264480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00017

  1. Dr_sW_001_H03
  2. Dr_sW_002_B13