Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_H03
(860 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14342|YB3C_SCHPO Hypothetical protein C2F12.12c in chro... 96 2e-19
sp|P40480|HOS4_YEAST Protein HOS4 37 0.071
sp|Q61624|ZN148_MOUSE Zinc finger protein 148 (Zinc finger ... 35 0.35
sp|Q62806|ZN148_RAT Zinc finger protein 148 (Zinc finger DN... 34 0.60
sp|Q9UQR1|ZN148_HUMAN Zinc finger protein 148 (Zinc finger ... 33 1.0
sp|Q07283|TRHY_HUMAN Trichohyalin 33 1.0
sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25... 33 1.0
sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST... 32 1.7
sp|Q9H6D3|XKR8_HUMAN XK-related protein 8 32 2.3
sp|Q9AHD4|CPSB1_STRPN Tyrosine-protein phosphatase cpsB 32 2.3
>sp|O14342|YB3C_SCHPO Hypothetical protein C2F12.12c in chromosome II
Length = 517
Score = 95.5 bits (236), Expect = 2e-19
Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 9/94 (9%)
Frame = +3
Query: 606 RKPRFLNRVNTGFDWNKYNQTHYDMDNPPPKIVQGYKFNILYPDLIDKTKTPTFEL---- 773
+KP + NRV GF+WN YNQ H++ +PPPK VQGY+FN+ YPDLI + PT+ +
Sbjct: 389 KKPHYFNRVLLGFEWNSYNQAHFNEAHPPPKAVQGYRFNVFYPDLIGTGRAPTYRIERTR 448
Query: 774 ----TPCAD-DDQYAIITFKAGPPYEDIAFKIVN 860
+ D D II F AG PY+DIAF IV+
Sbjct: 449 RKNKSDTTDLQDDVCIIRFIAGEPYQDIAFSIVD 482
>sp|P40480|HOS4_YEAST Protein HOS4
Length = 1083
Score = 37.0 bits (84), Expect = 0.071
Identities = 50/195 (25%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Frame = +3
Query: 207 KLKHEQGLPVEPLFPSAVVQKEEKVEAKATNSKKTEFILEREEYDHHRYSPVLLSTEEIG 386
KLK L +EP P E + T +++ + E EEY R +E+
Sbjct: 765 KLKSISPLSMEPHSPKKAKSVEISKIHEETAAEREARLKEEEEYRKKRLEKKRKKEQELL 824
Query: 387 DEAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIKLVQEGHEKGESDFNEQFAL 566
+ LAED+ K++E K+ K+ + + L K E K E + +
Sbjct: 825 QK-------LAEDEKKRIEEQEKQ-------KVLEMERLEKATLEKARKME----REKEM 866
Query: 567 EEQSFLWS--DKYRPRKPRFLNRVNTGFDWNKYNQTHYDMDNPPPKIVQGYKFNILYP-- 734
EE S+ + D Y P + +N N D+ ++ +Y +D K V + IL
Sbjct: 867 EEISYRRAVRDLY-PLGLKIIN-FNDKLDYKRFLPLYYFVDEKNDKFVLDLQVMILLKDI 924
Query: 735 DLIDKTKTPTFELTP 779
DL+ K PT E P
Sbjct: 925 DLLSKDNQPTSEKIP 939
>sp|Q61624|ZN148_MOUSE Zinc finger protein 148 (Zinc finger DNA binding protein 89)
(Transcription factor ZBP-89) (G-rich box-binding
protein) (Beta enolase repressor factor 1)
(Transcription factor BFCOL1)
Length = 794
Score = 34.7 bits (78), Expect = 0.35
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Frame = +3
Query: 120 EYFCKLANVLIAKKRLQERHSNNLRLKLIK-----LKHEQGLPVEPLFPSAVVQKEEKVE 284
+YF + VL K+ E H L IK + + G P S +K +K E
Sbjct: 262 QYFSRTDRVLKHKRMCHENHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTE 321
Query: 285 AKATNSKKTEFILEREEY--DHHRYSPVLLSTEEIGDE 392
K++ K E +L++ + D + Y P+ S+ ++ DE
Sbjct: 322 KKSSGMDK-ESVLDKSDLKKDKNDYLPLYSSSTKVKDE 358
>sp|Q62806|ZN148_RAT Zinc finger protein 148 (Zinc finger DNA binding protein 89)
(Transcription factor ZBP-89)
Length = 794
Score = 33.9 bits (76), Expect = 0.60
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 7/98 (7%)
Frame = +3
Query: 120 EYFCKLANVLIAKKRLQERHSNNLRLKLIK-----LKHEQGLPVEPLFPSAVVQKEEKVE 284
+YF + VL K+ E H L IK + + G P S +K +K E
Sbjct: 262 QYFSRTDRVLKHKRMCHENHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKPE 321
Query: 285 AKATNSKKTEFILEREE--YDHHRYSPVLLSTEEIGDE 392
K++ K E +L++ + D + Y P+ S+ ++ DE
Sbjct: 322 KKSSGMDK-ESVLDKSDTKKDRNDYLPLYSSSTKVKDE 358
>sp|Q9UQR1|ZN148_HUMAN Zinc finger protein 148 (Zinc finger DNA binding protein 89)
(Transcription factor ZBP-89)
Length = 794
Score = 33.1 bits (74), Expect = 1.0
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 7/98 (7%)
Frame = +3
Query: 120 EYFCKLANVLIAKKRLQERHSNNLRLKLIK-----LKHEQGLPVEPLFPSAVVQKEEKVE 284
+YF + VL K+ E H L IK + + G P S +K +K E
Sbjct: 262 QYFSRTDRVLKHKRMCHENHDKKLNRCAIKGGLLTSEEDSGFSTSPKDNSLPKKKRQKTE 321
Query: 285 AKATNSKKTEFILEREEY--DHHRYSPVLLSTEEIGDE 392
K++ K E L++ + D + Y P+ S+ ++ DE
Sbjct: 322 KKSSGMDK-ESALDKSDLKKDKNDYLPLYSSSTKVKDE 358
>sp|Q07283|TRHY_HUMAN Trichohyalin
Length = 1898
Score = 33.1 bits (74), Expect = 1.0
Identities = 36/154 (23%), Positives = 70/154 (45%)
Frame = +3
Query: 159 KRLQERHSNNLRLKLIKLKHEQGLPVEPLFPSAVVQKEEKVEAKATNSKKTEFILEREEY 338
KR QE + L LK + + +Q L E +EE++E + + LE+EE
Sbjct: 587 KREQEERRDQL-LKREEERRQQRLKRE---------QEERLEQRLKREEVER--LEQEER 634
Query: 339 DHHRYSPVLLSTEEIGDEAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIKLVQ 518
R L EE +E ++ E ++++ E +R++ + ++ +E+E +L Q
Sbjct: 635 RDER-----LKREEPEEERRHELLKSEEQEERRHEQLRREQQERREQRLKREEEEERLEQ 689
Query: 519 EGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRF 620
+ E + EQ EE+ ++ + R P++
Sbjct: 690 RLKREHEEERREQELAEEEQEQARERIKSRIPKW 723
Score = 30.8 bits (68), Expect = 5.1
Identities = 32/142 (22%), Positives = 65/142 (45%), Gaps = 2/142 (1%)
Frame = +3
Query: 156 KKRLQERHSNNLRLKLIKLKHEQGLPVEPLFPSAVVQKEEKVEAKATNSKKTEFIL--ER 329
K+R QER + K ++ K EQ L EP ++E+K + ++ E +L ER
Sbjct: 967 KRRRQERERQYRKDKKLQQKEEQLLGEEP-EKRRRQEREKKYREEEELQQEEEQLLREER 1025
Query: 330 EEYDHHRYSPVLLSTEEIGDEAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIK 509
E+ + +E+ E E + E + ++L+ +++ + ++ QE+E +
Sbjct: 1026 EKRRRQEWERQYRKKDELQQE--EEQLLREEREKRRLQERERQYRE--EEELQQEEEQL- 1080
Query: 510 LVQEGHEKGESDFNEQFALEEQ 575
L +E + + Q+ EE+
Sbjct: 1081 LGEERETRRRQELERQYRKEEE 1102
>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25)
Length = 393
Score = 33.1 bits (74), Expect = 1.0
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +3
Query: 519 EGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRFL--NRVNTGFDWNKYNQTHYDMDNPP 692
+ HEK + + A + + + + + + P ++ N G+ W KY Q P
Sbjct: 126 QDHEKKQEMIPNEIATQNNNQSFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENP 185
Query: 693 PKIVQGYKFNILYPDLIDKTKTPTFELTPCADDDQYAIITFKAG 824
F YPD + K ++ A D Q I +K G
Sbjct: 186 RSY-----FKCTYPDCVSK------KIVETASDGQITEIIYKGG 218
>sp|Q8BRB7|MYST4_MOUSE Histone acetyltransferase MYST4 (MYST protein 4) (MOZ, YBF2/SAS3,
SAS2 and TIP60 protein 4) (Querkopf protein)
Length = 1872
Score = 32.3 bits (72), Expect = 1.7
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 1/112 (0%)
Frame = +3
Query: 213 KHEQGLPVEP-LFPSAVVQKEEKVEAKATNSKKTEFILEREEYDHHRYSPVLLSTEEIGD 389
+ E G+PV P P V +E+ + + ++ E EREE + EE+
Sbjct: 1128 REETGIPVSPHKSPGGKVDEEDLIRGEEEGEEEGEEEGEREEQEEE---------EEVTT 1178
Query: 390 EAIENVIYLAEDDDKKLEFMRKKFLQFGSHKIDQEDELIKLVQEGHEKGESD 545
E + E+ + ++ ++ + G H+ D+++E E H+ + D
Sbjct: 1179 EKDLDGAKSKENPEPEISMEKEDPVHLGDHEEDEDEEEEPSHNEDHDADDED 1230
>sp|Q9H6D3|XKR8_HUMAN XK-related protein 8
Length = 395
Score = 32.0 bits (71), Expect = 2.3
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -3
Query: 435 FYHHLPLNKSHFRWLHRRFLQWITKPDCIDGDRTLLSP 322
F+ L L ++ WLH W PD +DG R+LLSP
Sbjct: 327 FFLGLALRLVYYHWLHPSCC-WKPDPDQVDGARSLLSP 363
>sp|Q9AHD4|CPSB1_STRPN Tyrosine-protein phosphatase cpsB
Length = 243
Score = 32.0 bits (71), Expect = 2.3
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 699 IVQGYKFNILY-PDLIDKTKTPTFELTPCADDDQYAIITFKAGPPYEDI 842
+V Y I Y PD++DK + P +D +YA+I F PY DI
Sbjct: 73 LVIAYGAEIYYTPDVLDKLEKKRI---PTLNDSRYALIEFSMNTPYRDI 118
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,319,560
Number of Sequences: 369166
Number of extensions: 1838593
Number of successful extensions: 5512
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5507
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)