Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_002_B13
(754 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14342|YB3C_SCHPO Hypothetical protein C2F12.12c in chro... 121 2e-27
sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25... 33 0.82
sp|Q07283|TRHY_HUMAN Trichohyalin 33 1.1
sp|P42349|Y1242_SYNY3 Hypothetical methyltransferase sll124... 32 1.4
sp|Q9H6D3|XKR8_HUMAN XK-related protein 8 32 1.8
sp|Q9AHD4|CPSB1_STRPN Tyrosine-protein phosphatase cpsB 32 1.8
sp|Q49LS0|XKR8_PANTR XK-related protein 8 32 1.8
sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E) 32 1.8
sp|P21733|YCR2_BACTK Hypothetical 29.1 kDa protein in cryB1... 32 2.4
sp|P53746|FRE4_YEAST Ferric reductase transmembrane compone... 32 2.4
>sp|O14342|YB3C_SCHPO Hypothetical protein C2F12.12c in chromosome II
Length = 517
Score = 121 bits (304), Expect = 2e-27
Identities = 57/129 (44%), Positives = 81/129 (62%), Gaps = 11/129 (8%)
Frame = +1
Query: 352 RKPRFLNRVNTGFDWNKYNQTHYDMDNPPPKIVQGYKFNILYPDLIDKTKTPTFEL---- 519
+KP + NRV GF+WN YNQ H++ +PPPK VQGY+FN+ YPDLI + PT+ +
Sbjct: 389 KKPHYFNRVLLGFEWNSYNQAHFNEAHPPPKAVQGYRFNVFYPDLIGTGRAPTYRIERTR 448
Query: 520 ----TPCAD-DDQYAIITFKAGPPYEDIAFKIVNREWETSER--HGYKCQFYRDMLQLYF 678
+ D D II F AG PY+DIAF IV+++W+ S + HG+K F +L L+F
Sbjct: 449 RKNKSDTTDLQDDVCIIRFIAGEPYQDIAFSIVDKDWDYSAKRDHGFKSSFDNGVLSLHF 508
Query: 679 HFKRYRYRK 705
FK+ +R+
Sbjct: 509 RFKKLHHRR 517
>sp|O22921|WRK25_ARATH Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25)
Length = 393
Score = 33.1 bits (74), Expect = 0.82
Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 2/104 (1%)
Frame = +1
Query: 265 EGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRFL--NRVNTGFDWNKYNQTHYDMDNPP 438
+ HEK + + A + + + + + + P ++ N G+ W KY Q P
Sbjct: 126 QDHEKKQEMIPNEIATQNNNQSFGTERQIKIPAYMVSRNSNDGYGWRKYGQKQVKKSENP 185
Query: 439 PKIVQGYKFNILYPDLIDKTKTPTFELTPCADDDQYAIITFKAG 570
F YPD + K ++ A D Q I +K G
Sbjct: 186 RSY-----FKCTYPDCVSK------KIVETASDGQITEIIYKGG 218
>sp|Q07283|TRHY_HUMAN Trichohyalin
Length = 1898
Score = 32.7 bits (73), Expect = 1.1
Identities = 26/119 (21%), Positives = 57/119 (47%)
Frame = +1
Query: 10 QKEEKVEAKATNSKKTEFILEREEYDHHRYSPVLLSTEEIGDEAIENVIYLAEDDDKKLE 189
++EE++E + + LE+EE R L EE +E ++ E ++++ E
Sbjct: 612 EQEERLEQRLKREEVER--LEQEERRDER-----LKREEPEEERRHELLKSEEQEERRHE 664
Query: 190 FMRKKFLQFGSHKIDQEDELIKLVQEGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRF 366
+R++ + ++ +E+E +L Q + E + EQ EE+ ++ + R P++
Sbjct: 665 QLRREQQERREQRLKREEEEERLEQRLKREHEEERREQELAEEEQEQARERIKSRIPKW 723
>sp|P42349|Y1242_SYNY3 Hypothetical methyltransferase sll1242 (ORF N)
Length = 536
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +1
Query: 538 DQYAIITFKAGPPYEDIAFKIVNREWETSERHGYKCQFYRDMLQL 672
+Q ++ F P EDIA + V WE + HGY + YR L+L
Sbjct: 380 NQTTLMNFIPTRPLEDIANEYVEAFWELYDPHGYLDRNYRCFLKL 424
>sp|Q9H6D3|XKR8_HUMAN XK-related protein 8
Length = 395
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 181 FYHHLPLNKSHFRWLHRRFLQWITKPDCIDGDRTLLSP 68
F+ L L ++ WLH W PD +DG R+LLSP
Sbjct: 327 FFLGLALRLVYYHWLHPSCC-WKPDPDQVDGARSLLSP 363
>sp|Q9AHD4|CPSB1_STRPN Tyrosine-protein phosphatase cpsB
Length = 243
Score = 32.0 bits (71), Expect = 1.8
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 445 IVQGYKFNILY-PDLIDKTKTPTFELTPCADDDQYAIITFKAGPPYEDI 588
+V Y I Y PD++DK + P +D +YA+I F PY DI
Sbjct: 73 LVIAYGAEIYYTPDVLDKLEKKRI---PTLNDSRYALIEFSMNTPYRDI 118
>sp|Q49LS0|XKR8_PANTR XK-related protein 8
Length = 395
Score = 32.0 bits (71), Expect = 1.8
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -1
Query: 181 FYHHLPLNKSHFRWLHRRFLQWITKPDCIDGDRTLLSP 68
F+ L L ++ WLH W PD +DG R+LLSP
Sbjct: 327 FFLGLALRLVYYHWLHPSCC-WKPDPDQVDGARSLLSP 363
>sp|Q8K9J9|RNE_BUCAP Ribonuclease E (RNase E)
Length = 968
Score = 32.0 bits (71), Expect = 1.8
Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 3/164 (1%)
Frame = +1
Query: 7 VQKEEKVEAKATNSKKTEFILEREEYDHHRYSPVLLSTEEIGDEAIENVIYLAEDDDKKL 186
+ K++ + N+KK + + + ++ ++H+YS V D
Sbjct: 618 IHKKDNQVSSIDNNKKKQLLNKVKKNNNHQYSHVF---------------------DNNT 656
Query: 187 EFMRKKFLQFGSHKIDQEDELIKLVQEGHEKGESDFNEQFALEEQSFLWSDKYRPRKPRF 366
++ K + F + ID E + +++ N + + +FL++ KY K +
Sbjct: 657 KYTSLKKIDFQKNTIDFELNSLNFLKK---------NNFYIFSKYNFLYTKKYAKNKFKD 707
Query: 367 LNRVNTGFDWNKYNQTHYDMDNP---PPKIVQGYKFNILYPDLI 489
+ + D Y D++N K++ FN YP+ I
Sbjct: 708 FENIKSQNDMICYESFQKDLENNTSFKKKLLYNIIFNNCYPNNI 751
>sp|P21733|YCR2_BACTK Hypothetical 29.1 kDa protein in cryB1 5'region (ORF2)
Length = 252
Score = 31.6 bits (70), Expect = 2.4
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 8/93 (8%)
Frame = +1
Query: 238 EDELIKLVQEGHEKGESDFNEQFALEEQSFLW--SDK----YRPRKPRFLNRVNTGFDWN 399
EDELI + G KG+ + F +E QSFL+ +DK Y + + +NT N
Sbjct: 11 EDELINIYSYGDFKGQGKYICLFKIENQSFLFWRNDKGNKIYTNLESISVEIINTN---N 67
Query: 400 KYNQTHYDMDNPPPKIVQGY--KFNILYPDLID 492
YNQ+ + P +V Y N+ DL+D
Sbjct: 68 TYNQS---QNVCPQDLVDTYNQSQNVCPQDLVD 97
>sp|P53746|FRE4_YEAST Ferric reductase transmembrane component 4 precursor
(Ferric-chelate reductase 4)
Length = 719
Score = 31.6 bits (70), Expect = 2.4
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 LVQEGHEKGESDFNEQFALEE-QSFLWSDKYRPRKPRFLNRVNTGFDWNKYNQTHYDMDN 432
L ++ HEKG S+ + EE + F ++ P+FLN + F + N T+Y D
Sbjct: 69 LYEDTHEKGYSNKTLEKGFEEMRQFCYT-------PKFLNMTDAEFYTSLDNGTYYIQDQ 121
Query: 433 PPPKIVQGYKFNILYPDLIDKT 498
P I NI YP ++ T
Sbjct: 122 PKAGI------NITYPIRLNTT 137
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,164,634
Number of Sequences: 369166
Number of extensions: 1737057
Number of successful extensions: 4879
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4874
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6873311200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)