Planaria EST Database


DrC_00009

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00009
         (830 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYM8|UB7I3_HUMAN  Ubiquitin-conjugating enzyme 7-intera...    99   2e-20
sp|Q62921|UB7I3_RAT  Ubiquitin-conjugating enzyme 7-interact...    98   2e-20
sp|Q9WUB0|UB7I3_MOUSE  Ubiquitin-conjugating enzyme 7-intera...    97   5e-20
sp|Q8WTR7|ZN473_HUMAN  Zinc finger protein 473 (Zinc finger ...    42   0.002
sp|Q6ZMZ0|IBR3_HUMAN  IBR domain containing protein 3              42   0.002
sp|P50636|RNF19_MOUSE  RING finger protein 19 (XY body prote...    39   0.013
sp|Q9NV58|RNF19_HUMAN  RING finger protein 19 (Dorfin) (Doub...    39   0.013
sp|O95376|ARI2_HUMAN  Ariadne-2 protein homolog (ARI-2) (Tri...    39   0.023
sp|Q9Z1K6|ARI2_MOUSE  Ariadne-2 protein homolog (ARI-2) (Tri...    37   0.051
sp|Q96EP0|RNF31_HUMAN  RING finger protein 31 (Zinc in-betwe...    37   0.067
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
           virus X-associated protein 4) (HBV-associated factor 4)
           (RING finger protein 54)
          Length = 500

 Score = 98.6 bits (244), Expect = 2e-20
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 13/221 (5%)
 Frame = +1

Query: 103 VQYDCKQCSLFN---------CVRCKAPHKWKSCGQYKSLGSVEAQKLCQDEFQRARAEL 255
           V + C  C+  N         C R + P  ++    Y+      A+   ++E  R   + 
Sbjct: 185 VGWQCPGCTFINKPTRPGCEMCCRAR-PEAYQVPASYQPDEEERARLAGEEEALRQYQQR 243

Query: 256 NKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQCFHNVCRDCIKQHV 435
            ++Q   N  + V  D   L+ N+E  +C +C +++   + + LR+C H  CR+C++  +
Sbjct: 244 KQQQQEGNYLQHVQLDQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTI 303

Query: 436 ISFPDIPISCP-INN---CGLLMEDRESRELLNPMECSLFERKSLYKAKSKLQKSDHCRK 603
            +  +  +SCP I+N   C   + +RE + LL P +   F    +  A+++   S HC+ 
Sbjct: 304 RNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDLGISIAENRSAFSYHCKT 363

Query: 604 ENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEY 726
            +C+ +     ++ ++TC  C   NCL C AIH    C EY
Sbjct: 364 PDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEY 404

 Score = 43.9 bits (102), Expect = 5e-04
 Identities = 26/116 (22%), Positives = 49/116 (42%)
 Frame = +1

Query: 49  HECLLTECKMIIMFSDLNVQYDCKQCSLFNCVRCKAPHKWKSCGQYKSLGSVEAQKLCQD 228
           + C   +CK    F D   ++ C  C   NC+ CKA H+  +C +Y+           +D
Sbjct: 359 YHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEYQ-----------ED 407

Query: 229 EFQRARAELNKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQC 396
              RA+ ++  RQ++   +        +++   E  +C  C  ++ K  G    +C
Sbjct: 408 LALRAQNDVAARQTTEMLK--------VMLQQGEAMRCPQCQIVVQKKDGCDWIRC 455
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
           interacting with PKC) (Protein kinase C-binding protein
           beta-15)
          Length = 498

 Score = 98.2 bits (243), Expect = 2e-20
 Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 13/221 (5%)
 Frame = +1

Query: 103 VQYDCKQCSLFN---------CVRCKAPHKWKSCGQYKSLGSVEAQKLCQDEFQRARAEL 255
           V + C  C+  N         C R + P  ++    Y+      A+   ++E  R   + 
Sbjct: 183 VGWQCPGCTFINKPTRPGCEMCCRAR-PEAYQIPASYQPDEEERARLAGEEEALRQYEQR 241

Query: 256 NKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQCFHNVCRDCIKQHV 435
            ++Q   N  + V  +   L+ N+E  +C +C +++   + + LR+C H  CR+C++  +
Sbjct: 242 KQQQQEGNYLQHVQLEQRSLVLNTEPAECPVCYSVLAPGEAVVLRECLHTFCRECLQGTI 301

Query: 436 ISFPDIPISCP-INN---CGLLMEDRESRELLNPMECSLFERKSLYKAKSKLQKSDHCRK 603
            +  +  +SCP I+N   C   + +RE R LL+P +   F    +  A+++   S HC+ 
Sbjct: 302 RNSQEAEVSCPFIDNTYSCPGKLLEREIRALLSPEDYQRFLDLGVSIAENRSTLSYHCKT 361

Query: 604 ENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEY 726
            +C  +     ++ ++TC  C   NCL C AIH    C EY
Sbjct: 362 PDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHERMNCREY 402

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 25/116 (21%), Positives = 48/116 (41%)
 Frame = +1

Query: 49  HECLLTECKMIIMFSDLNVQYDCKQCSLFNCVRCKAPHKWKSCGQYKSLGSVEAQKLCQD 228
           + C   +C+    F D   ++ C  C+  NC+ CKA H+  +C +Y+            D
Sbjct: 357 YHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHERMNCREYQ-----------DD 405

Query: 229 EFQRARAELNKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQC 396
              RAR ++  +Q++   +        +++   E   C  C  ++ K  G    +C
Sbjct: 406 LAHRARNDVAAQQTTEMLR--------VMLQQGEAMYCPQCRIVVQKKDGCDWIRC 453
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
           (UbcM4-interacting protein 28)
          Length = 498

 Score = 97.1 bits (240), Expect = 5e-20
 Identities = 54/221 (24%), Positives = 103/221 (46%), Gaps = 13/221 (5%)
 Frame = +1

Query: 103 VQYDCKQCSLFN---------CVRCKAPHKWKSCGQYKSLGSVEAQKLCQDEFQRARAEL 255
           V + C  C+  N         C R + P  ++    Y+      A+   ++E  R   + 
Sbjct: 183 VGWQCPGCTFINKPTRPGCEMCCRAR-PETYQIPASYQPDEEERARLAGEEEALRQYQQR 241

Query: 256 NKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQCFHNVCRDCIKQHV 435
            ++Q   N  + V  +   L+ N+E  +C +C +++   + + LR+C H  CR+C++  +
Sbjct: 242 KQQQQEGNYLQHVQLEQRSLVLNTEPTECPVCYSVLAPGEAVVLRECLHTFCRECLQGTI 301

Query: 436 ISFPDIPISCPI----NNCGLLMEDRESRELLNPMECSLFERKSLYKAKSKLQKSDHCRK 603
            +  +  ++CP      +C   + +RE R LL+P +   F    +  A+++   S HC+ 
Sbjct: 302 RNSQEAEVACPFIDSTYSCPGKLLEREIRALLSPEDYQRFLDLGVSIAENRSTLSYHCKT 361

Query: 604 ENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEY 726
            +C  +     ++ ++TC  C   NCL C AIH +  C EY
Sbjct: 362 PDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHEHMNCREY 402

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 26/116 (22%), Positives = 46/116 (39%)
 Frame = +1

Query: 49  HECLLTECKMIIMFSDLNVQYDCKQCSLFNCVRCKAPHKWKSCGQYKSLGSVEAQKLCQD 228
           + C   +C+    F D   ++ C  C+  NC+ CKA H+  +C +Y+   ++ AQ    D
Sbjct: 357 YHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHEHMNCREYQDDLALRAQ---ND 413

Query: 229 EFQRARAELNKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQC 396
              R   E+ K                +++   E   C  C  ++ K  G    +C
Sbjct: 414 VAARQTTEMLK----------------VMLQQGEAMHCPQCRIVVQKKDGCDWIRC 453
>sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 (Zinc finger protein 100 homolog) (Zfp-100)
          Length = 871

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 46/241 (19%), Positives = 92/241 (38%), Gaps = 30/241 (12%)
 Frame = +1

Query: 106  QYDCKQC-SLFNC----VRCKAPHKWKSCGQYKSLGSVEAQKLCQDEFQRARA-----EL 255
            +Y+C +C + FN     ++ +  H  K+  + +  G +        E Q   A     + 
Sbjct: 346  RYECSKCQATFNLRKHLIQHQKTHAAKTTSECQECGKIFRHSSLLIEHQALHAGEEPYKC 405

Query: 256  NKRQSSSNRQRLVAADHSILIPNSEVFQCDICNTIIGKHKGITLRQCFH-----NVCRDC 420
            N+R   S R       H  +    + ++C  C     +H  +   +  H     + C++C
Sbjct: 406  NER-GKSFRHNSTLKIHQRVHSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPHKCQEC 464

Query: 421  IKQ----------HVISFPDIPISCP-----INNCGLLMEDRESRELLNPMECSLFERKS 555
            ++             I   + P SC       ++   L++ ++   +  P EC     + 
Sbjct: 465  VRSFSRPSHLMRHQAIHTAEKPYSCAECKETFSDNNRLVQHQKMHTVKTPYECQECGERF 524

Query: 556  LYKAKSKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEYIKS 735
            +  +  K  +S H R++  + F   GK L+Q      +   C KCN      +C++Y+  
Sbjct: 525  ICGSTLKCHESVHAREK--QGFFVSGKILDQNPE---QKEKCFKCNKCEKTFSCSKYLTQ 579

Query: 736  H 738
            H
Sbjct: 580  H 580
>sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3
          Length = 486

 Score = 42.4 bits (98), Expect = 0.002
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
 Frame = +1

Query: 385 LRQCFHNVCRDCIKQHV---ISFPDIPISCPINNCGLLMEDRESRELL-NPMECSLFERK 552
           L  C H  CRDC++ ++   IS   +PISCP   C   +   + R LL +P     +E  
Sbjct: 33  LLSCPHRSCRDCLRHYLRLEISESRVPISCP--ECSERLNPHDIRLLLADPPLMHKYEEF 90

Query: 553 SLYKAKSKLQKSDHCRKENCEYFIDV--GKNLEQWTC--VNCKSNNCLKCNAI-HNNQTC 717
            L +  +       C   +C Y +      +  + TC    C++  C  C  I H NQTC
Sbjct: 91  MLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTC 150
>sp|P50636|RNF19_MOUSE RING finger protein 19 (XY body protein) (XYbp) (Gametogenesis
           expressed protein GEG-154) (UBCM4-interacting protein
           117) (UIP117)
          Length = 840

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
 Frame = +1

Query: 328 EVFQCDICNTIIGKHKGITLRQCFHNVCRDCIKQHV---ISFPDIPISCPINNCGLLMED 498
           +  +C +C     K +   +  C H  C DC++Q++   IS   + ISCP   C      
Sbjct: 128 DFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCP--ECTERFNP 185

Query: 499 RESRELLNPMECSLFERKSLYKAKSKLQKSDHCR---KENCEYFIDV--GKNLEQWTC-- 657
            + R +L+  +  L E+   +  +  L     CR     +C Y +      +  + TC  
Sbjct: 186 HDIRLILS--DDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGR 243

Query: 658 VNCKSNNCLKCNAI-HNNQTC 717
             C +  C  C  I H NQTC
Sbjct: 244 EGCGTEFCYHCKQIWHPNQTC 264
>sp|Q9NV58|RNF19_HUMAN RING finger protein 19 (Dorfin) (Double ring-finger protein) (p38
           protein)
          Length = 838

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 11/141 (7%)
 Frame = +1

Query: 328 EVFQCDICNTIIGKHKGITLRQCFHNVCRDCIKQHV---ISFPDIPISCPINNCGLLMED 498
           +  +C +C     K +   +  C H  C DC++Q++   IS   + ISCP   C      
Sbjct: 128 DFIECPLCLLRHSKDRFPDIMTCHHRSCVDCLRQYLRIEISESRVNISCP--ECTERFNP 185

Query: 499 RESRELLNPMECSLFERKSLYKAKSKLQKSDHCR---KENCEYFIDV--GKNLEQWTC-- 657
            + R +L+  +  L E+   +  +  L     CR     +C Y +      +  + TC  
Sbjct: 186 HDIRLILS--DDVLMEKYEEFMLRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGR 243

Query: 658 VNCKSNNCLKCNAI-HNNQTC 717
             C +  C  C  I H NQTC
Sbjct: 244 EGCGTEFCYHCKQIWHPNQTC 264
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
          Length = 493

 Score = 38.5 bits (88), Expect = 0.023
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 12/179 (6%)
 Frame = +1

Query: 214 KLCQDEFQRARAELNKRQSSSNRQRLVAA----DHSILIPNSEV-FQCDICNTIIGKHKG 378
           KL    F    +E+  R  S++ Q LV A    + S  +P S     C +C   + K   
Sbjct: 92  KLILVNFHWQVSEILDRYKSNSAQLLVEARVQPNPSKHVPTSHPPHHCAVCMQFVRKENL 151

Query: 379 ITLRQCFHNVCRDCIKQH----VISFPDIPISCPINNCGLLMEDRESRELLNPMECSLFE 546
           ++L  C H  CR C +QH    V     + +SC   +C L   +     LL   E     
Sbjct: 152 LSLA-CQHQFCRSCWEQHCSVLVKDGVGVGVSCMAQDCPLRTPEDFVFPLLPNEELREKY 210

Query: 547 RKSLYK--AKSKLQKSDHCRKENCEYFIDVGK-NLEQWTCVNCKSNNCLKCNAIHNNQT 714
           R+ L++   +S  Q    C   +C   I V +    +  C  C    C KC  +++  T
Sbjct: 211 RRYLFRDYVESHYQ-LQLCPGADCPMVIRVQEPRARRVQCNRCNEVFCFKCRQMYHAPT 268
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 37.4 bits (85), Expect = 0.051
 Identities = 46/179 (25%), Positives = 71/179 (39%), Gaps = 12/179 (6%)
 Frame = +1

Query: 214 KLCQDEFQRARAELNKRQSSSNRQRLVAA----DHSILIPNSEV-FQCDICNTIIGKHKG 378
           KL    F    +E+  R  S++ Q LV A    + S  +P +     C +C   + K   
Sbjct: 91  KLILVNFHWQVSEILDRYRSNSAQLLVEARVQPNPSKHVPTAHPPHHCAVCMQFVRKENL 150

Query: 379 ITLRQCFHNVCRDCIKQH----VISFPDIPISCPINNCGLLMEDRESRELLNPMECSLFE 546
           ++L  C H  CR C +QH    V     + ISC   +C L   +     LL   E     
Sbjct: 151 LSLA-CQHQFCRSCWEQHCSVLVKDGVGVGISCMAQDCPLRTPEDFVFPLLPNEELRDKY 209

Query: 547 RKSLYK--AKSKLQKSDHCRKENCEYFIDVGK-NLEQWTCVNCKSNNCLKCNAIHNNQT 714
           R+ L++   +S  Q    C   +C   I V +    +  C  C    C KC  +++  T
Sbjct: 210 RRYLFRDYVESHFQ-LQLCPGADCPMVIRVQEPRARRVQCNRCSEVFCFKCRQMYHAPT 267
>sp|Q96EP0|RNF31_HUMAN RING finger protein 31 (Zinc in-between-RING-finger
            ubiquitin-associated domain protein)
          Length = 1072

 Score = 37.0 bits (84), Expect = 0.067
 Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 20/150 (13%)
 Frame = +1

Query: 337  QCDICNTIIGKHKGITLRQCFHNVCRDCIKQH-VISFPDIPIS---CPINNCGLLMEDR- 501
            +C +C   +  ++   L  C   +C DC +QH  I+  +  I+   CP      L +D  
Sbjct: 698  ECAVCGWALPHNRMQALTSCECTICPDCFRQHFTIALKEKHITDMVCPACGRPDLTDDTQ 757

Query: 502  ----------ESRELLNPMECSLFERKSLYKAKSKLQKSDHCRKENCEY-FIDVGKNLEQ 648
                      + RE L P   +LF +K       +  K   C +  C + FI   + LE 
Sbjct: 758  LLSYFSTLDIQLRESLEPDAYALFHKKLTEGVLMRDPKFLWCAQ--CSFGFIYEREQLEA 815

Query: 649  WTCVNCKSNNCLKC----NAIHNNQTCTEY 726
             TC  C    C++C       H  ++C ++
Sbjct: 816  -TCPQCHQTFCVRCKRQWEEQHRGRSCEDF 844
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,696,434
Number of Sequences: 369166
Number of extensions: 1958861
Number of successful extensions: 5509
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5494
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8052550455
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00009

  1. Dr_sW_001_C20
  2. Dr_sW_014_B10