Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_014_B10
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 74 2e-13
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 72 4e-13
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 72 4e-13
sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3 42 5e-04
sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 (Zinc finger ... 35 0.055
sp|P50636|RNF19_MOUSE RING finger protein 19 (XY body prote... 35 0.072
sp|Q9NV58|RNF19_HUMAN RING finger protein 19 (Dorfin) (Doub... 35 0.072
sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein ... 34 0.12
sp|Q8N895|ZN366_HUMAN Zinc finger protein 366 33 0.27
sp|Q8K3U6|FA7_RAT Coagulation factor VII precursor (Serum p... 33 0.27
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 73.6 bits (179), Expect = 2e-13
Identities = 38/118 (32%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Frame = +1
Query: 1 LRQCFHNVCRDCIKQHVISFPDIPISCP-INN---CGLLMEDRESRELLNPMECSLFERK 168
LR+C H CR+C++ + + + +SCP I+N C + +RE R LL+P + F
Sbjct: 285 LRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCPGKLLEREIRALLSPEDYQRFLDL 344
Query: 169 SLYKAKSKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEY 342
+ A+++ S HC+ +C + ++ ++TC C NCL C AIH C EY
Sbjct: 345 GVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHERMNCREY 402
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 72.4 bits (176), Expect = 4e-13
Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 4/118 (3%)
Frame = +1
Query: 1 LRQCFHNVCRDCIKQHVISFPDIPISCPI----NNCGLLMEDRESRELLNPMECSLFERK 168
LR+C H CR+C++ + + + ++CP +C + +RE R LL+P + F
Sbjct: 285 LRECLHTFCRECLQGTIRNSQEAEVACPFIDSTYSCPGKLLEREIRALLSPEDYQRFLDL 344
Query: 169 SLYKAKSKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEY 342
+ A+++ S HC+ +C + ++ ++TC C NCL C AIH + C EY
Sbjct: 345 GVSIAENRSTLSYHCKTPDCRGWCFFEDDVNEFTCPVCTRVNCLLCKAIHEHMNCREY 402
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 72.4 bits (176), Expect = 4e-13
Identities = 37/118 (31%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Frame = +1
Query: 1 LRQCFHNVCRDCIKQHVISFPDIPISCP-INN---CGLLMEDRESRELLNPMECSLFERK 168
LR+C H CR+C++ + + + +SCP I+N C + +RE + LL P + F
Sbjct: 287 LRECLHTFCRECLQGTIRNSQEAEVSCPFIDNTYSCSGKLLEREIKALLTPEDYQRFLDL 346
Query: 169 SLYKAKSKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEY 342
+ A+++ S HC+ +C+ + ++ ++TC C NCL C AIH C EY
Sbjct: 347 GISIAENRSAFSYHCKTPDCKGWCFFEDDVNEFTCPVCFHVNCLLCKAIHEQMNCKEY 404
>sp|Q6ZMZ0|IBR3_HUMAN IBR domain containing protein 3
Length = 486
Score = 42.4 bits (98), Expect = 5e-04
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Frame = +1
Query: 1 LRQCFHNVCRDCIKQHV---ISFPDIPISCPINNCGLLMEDRESRELL-NPMECSLFERK 168
L C H CRDC++ ++ IS +PISCP C + + R LL +P +E
Sbjct: 33 LLSCPHRSCRDCLRHYLRLEISESRVPISCP--ECSERLNPHDIRLLLADPPLMHKYEEF 90
Query: 169 SLYKAKSKLQKSDHCRKENCEYFIDV--GKNLEQWTC--VNCKSNNCLKCNAI-HNNQTC 333
L + + C +C Y + + + TC C++ C C I H NQTC
Sbjct: 91 MLRRYLASDPDCRWCPAPDCGYAVIAYGCASCPKLTCEREGCQTEFCYHCKQIWHPNQTC 150
>sp|Q8WTR7|ZN473_HUMAN Zinc finger protein 473 (Zinc finger protein 100 homolog) (Zfp-100)
Length = 871
Score = 35.4 bits (80), Expect = 0.055
Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Frame = +1
Query: 25 CRDCIKQ----------HVISFPDIPISCP-----INNCGLLMEDRESRELLNPMECSLF 159
C++C++ I + P SC ++ L++ ++ + P EC
Sbjct: 461 CQECVRSFSRPSHLMRHQAIHTAEKPYSCAECKETFSDNNRLVQHQKMHTVKTPYECQEC 520
Query: 160 ERKSLYKAKSKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTE 339
+ + + K +S H R++ + F GK L+Q + C KCN +C++
Sbjct: 521 GERFICGSTLKCHESVHAREK--QGFFVSGKILDQNPE---QKEKCFKCNKCEKTFSCSK 575
Query: 340 YITSH 354
Y+T H
Sbjct: 576 YLTQH 580
>sp|P50636|RNF19_MOUSE RING finger protein 19 (XY body protein) (XYbp) (Gametogenesis
expressed protein GEG-154) (UBCM4-interacting protein
117) (UIP117)
Length = 840
Score = 35.0 bits (79), Expect = 0.072
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Frame = +1
Query: 10 CFHNVCRDCIKQHV---ISFPDIPISCPINNCGLLMEDRESRELLNPMECSLFERKSLYK 180
C H C DC++Q++ IS + ISCP C + R +L+ + L E+ +
Sbjct: 150 CHHRSCVDCLRQYLRIEISESRVNISCP--ECTERFNPHDIRLILS--DDVLMEKYEEFM 205
Query: 181 AKSKLQKSDHCR---KENCEYFIDV--GKNLEQWTC--VNCKSNNCLKCNAI-HNNQTC 333
+ L CR +C Y + + + TC C + C C I H NQTC
Sbjct: 206 LRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTC 264
>sp|Q9NV58|RNF19_HUMAN RING finger protein 19 (Dorfin) (Double ring-finger protein) (p38
protein)
Length = 838
Score = 35.0 bits (79), Expect = 0.072
Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 11/119 (9%)
Frame = +1
Query: 10 CFHNVCRDCIKQHV---ISFPDIPISCPINNCGLLMEDRESRELLNPMECSLFERKSLYK 180
C H C DC++Q++ IS + ISCP C + R +L+ + L E+ +
Sbjct: 150 CHHRSCVDCLRQYLRIEISESRVNISCP--ECTERFNPHDIRLILS--DDVLMEKYEEFM 205
Query: 181 AKSKLQKSDHCR---KENCEYFIDV--GKNLEQWTC--VNCKSNNCLKCNAI-HNNQTC 333
+ L CR +C Y + + + TC C + C C I H NQTC
Sbjct: 206 LRRWLVADPDCRWCPAPDCGYAVIAFGCASCPKLTCGREGCGTEFCYHCKQIWHPNQTC 264
>sp|Q8AWW5|CRIM1_CHICK Cysteine-rich motor neuron 1 protein precursor (CRIM-1)
Length = 1048
Score = 34.3 bits (77), Expect = 0.12
Identities = 23/109 (21%), Positives = 41/109 (37%)
Frame = +1
Query: 7 QCFHNVCRDCIKQHVISFPDIPISCPINNCGLLMEDRESRELLNPMECSLFERKSLYKAK 186
+ +H+ CR+C + + I+CP+ NCG ++P +C + K
Sbjct: 632 ESWHDGCRECYCHNGREMCAL-ITCPVPNCG--------NPTIHPGQCCPSCPDEIIVQK 682
Query: 187 SKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTC 333
+L C EYF++ E W +C C + + C
Sbjct: 683 PELTSPSICHAPGGEYFVEG----ETWNIDSCTQCTCHSGRVLCETEVC 727
>sp|Q8N895|ZN366_HUMAN Zinc finger protein 366
Length = 744
Score = 33.1 bits (74), Expect = 0.27
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +1
Query: 178 KAKSKLQKSDHCRKENCEYFIDVGKNLEQWTCVNCKSNNCLKCNAIHNNQTCTEYITSHV 357
+ K K+++ D + + Y++DVG + ++W C C+ + K N + +I H
Sbjct: 224 ETKQKVERVDVNVQIDDSYYVDVGGSQKRWQCPTCEKSYTSKYNLV-------THILGHS 276
Query: 358 GNKDQ--DHIEKLIKK 399
G K H KL K+
Sbjct: 277 GIKPHACTHCGKLFKQ 292
>sp|Q8K3U6|FA7_RAT Coagulation factor VII precursor (Serum prothrombin conversion
accelerator) [Contains: Factor VII light chain; Factor
VII heavy chain]
Length = 446
Score = 33.1 bits (74), Expect = 0.27
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 15/92 (16%)
Frame = +1
Query: 136 NPMECSLFERKSLYKAKSKLQK-------SDHCRKENCEYFIDVGKNLEQWTCV------ 276
N CS E + ++K+ + ++ D C C+ +L+ + C
Sbjct: 59 NEERCSFEEAREIFKSPERTKQFWTIYSDGDQCASNPCQNGGTCQDHLKSYVCFCPLDFE 118
Query: 277 --NCKSNNCLKCNAIHNNQTCTEYITSHVGNK 366
NC+ N + + N C +Y HVG K
Sbjct: 119 GRNCEKNKNEQLICANENGDCDQYCRDHVGTK 150
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,975,894
Number of Sequences: 369166
Number of extensions: 998884
Number of successful extensions: 2523
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2516
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)