Planaria EST Database

DrC_00004

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_00004
         (639 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96PD5|PGRP2_HUMAN  N-acetylmuramoyl-L-alanine amidase pr...   157   3e-38
sp|Q8INK6|PGPLB_DROME  Peptidoglycan-recognition protein-LB ...   155   1e-37
sp|Q70PY2|PGSB1_DROME  Peptidoglycan-recognition protein-SB1...   147   2e-35
sp|Q866Y3|PGRP2_PIG  N-acetylmuramoyl-L-alanine amidase prec...   147   3e-35
sp|Q8VCS0|PGRP2_MOUSE  N-acetylmuramoyl-L-alanine amidase pr...   147   3e-35
sp|Q70PU1|PGSC2_DROSI  Peptidoglycan-recognition protein-SC2...   137   2e-32
sp|Q96LB9|PGRP3_HUMAN  Peptidoglycan recognition protein I-a...   124   2e-28
sp|O75594|PGRP_HUMAN  Peptidoglycan recognition protein prec...   124   3e-28
sp|Q9GK12|PGRP_CAMDR  Peptidoglycan recognition protein prec...   122   6e-28
sp|Q70PU2|PGSC1_DROSI  Peptidoglycan-recognition protein-SC1...   121   1e-27

>sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
           recognition protein long) (PGRP-L) (Peptidoglycan
           recognition protein 2)
          Length = 576

 Score =  157 bits (396), Expect = 3e-38
 Identities = 73/162 (45%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
 Frame = +3

Query: 81  RQQWGAVSATSESKLTSIPK-YVFIHHSYIP-PACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           R +WGA       KL  +P  ++++HH+Y+P P C D + C+  M+ +Q  H +T GW D
Sbjct: 385 RCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGD 444

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQ-LI 431
           IGYSF +G DG VY GRGW   GAHT G+NS G G  ++G+Y   LP + AL T++  L 
Sbjct: 445 IGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTLP 504

Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
             AV    +  +Y L GHR +V  T+CPG AL+DL++TWPH+
Sbjct: 505 SCAVRAGLLRPDYALLGHRQLV-RTDCPGDALFDLLRTWPHF 545

>sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB precursor
          Length = 232

 Score =  155 bits (391), Expect = 1e-37
 Identities = 73/161 (45%), Positives = 95/161 (59%)
 Frame = +3

Query: 75  VTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           ++R  WGA    S         YV IHHSY+P  CY    C  +M+++Q+ H    GW+D
Sbjct: 33  LSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWND 92

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
           IGYSF IGGDG +Y GRG+++ GAH   YN   +G ++IGD+RTELP    L+  K LI 
Sbjct: 93  IGYSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIA 152

Query: 435 YAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
           + V    ID  Y L GHR  V  TECPG  L+  I +WPH+
Sbjct: 153 FGVFKGYIDPAYKLLGHR-QVRDTECPGGRLFAEISSWPHF 192

>sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1 precursor
          Length = 190

 Score =  147 bits (372), Expect = 2e-35
 Identities = 74/180 (41%), Positives = 100/180 (55%)
 Frame = +3

Query: 18  LIWTCLIMTLFELSNAFEFVTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSC 197
           L+  CL ++    +NA +   R  WGAVSA S S+++    YV IHHS  P  C     C
Sbjct: 13  LVLCCLALS----ANALQIEPRSSWGAVSARSPSRISGAVDYVIIHHSDNPNGCSTSEQC 68

Query: 198 SNAMKEIQNLHMNTNGWSDIGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGD 377
              +K IQ+ H     +SDIGY+F + GDG+VY GRG+ L G+H+  YN   +G + IG+
Sbjct: 69  KRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKVYEGRGFGLQGSHSPNYNRKSIGIVFIGN 128

Query: 378 YRTELPNDLALNTLKQLIDYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
           +    P+   L   K LI+ A     +  NY L GHR     T CPG ALY+ IKTWPH+
Sbjct: 129 FERSAPSAQMLQNAKDLIELAKQRGYLKDNYTLFGHR-QTKATSCPGDALYNEIKTWPHW 187

>sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
           recognition protein long) (PGRP-L) (Peptidoglycan
           recognition protein 2)
          Length = 598

 Score =  147 bits (370), Expect = 3e-35
 Identities = 69/162 (42%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
 Frame = +3

Query: 81  RQQWGAVSATSESKLTSIPK-YVFIHHSYIPPA-CYDLSSCSNAMKEIQNLHMNTNGWSD 254
           R +WGA       K   +P  +++IHH+Y+P   C D + C+  M+ +Q  H++T GW D
Sbjct: 407 RCRWGAAPYRGSPKPLKLPLGFLYIHHTYVPARPCTDFALCAANMRSMQRFHLDTQGWDD 466

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLK-QLI 431
           IGYSF +G DG VY GRGW   GAHT+ +NS G G  +IG+Y  ELP++ AL  ++ +L 
Sbjct: 467 IGYSFVVGSDGYVYEGRGWHWVGAHTRDHNSRGFGVALIGNYTAELPSEAALRAVRDELP 526

Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
             AV    +  +Y L GHR +V  T+CPG AL+++++TWP +
Sbjct: 527 HCAVRAGLLQPDYALLGHRQLV-RTDCPGDALFNMLRTWPRF 567

>sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
           recognition protein long) (PGRP-L) (Peptidoglycan
           recognition protein 2) (TagL)
          Length = 530

 Score =  147 bits (370), Expect = 3e-35
 Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
 Frame = +3

Query: 81  RQQWGAVSATSESKLTSIPK-YVFIHHSYIP-PACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           R +WGA           +P  ++++HH+Y+P P C    SC+  M+ +Q  H +   W D
Sbjct: 365 RCRWGAAPYRGHPTPLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVRKWDD 424

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQ-LI 431
           IGYSF +G DG +Y GRGW   GAHT+GYNS G G   +G+Y   LPN+ ALNT++  L 
Sbjct: 425 IGYSFVVGSDGYLYQGRGWHWVGAHTRGYNSRGFGVAFVGNYTGSLPNEAALNTVRDALP 484

Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
             A+    +  +Y L GHR +V  T CPG AL++L++TWPH+
Sbjct: 485 SCAIRAGLLRPDYKLLGHRQLV-LTHCPGNALFNLLRTWPHF 525

>sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2 precursor
          Length = 184

 Score =  137 bits (345), Expect = 2e-32
 Identities = 67/161 (41%), Positives = 97/161 (60%)
 Frame = +3

Query: 75  VTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           V++ +WG  SATS++ L S   Y  IHH+     C   ++C   +K IQ  HM++ GW+D
Sbjct: 24  VSKSEWGGRSATSKTSLASYLSYAVIHHT-AGNYCSTKAACITQLKNIQAYHMDSLGWAD 82

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
           IGY+F IGGDG VY GRGW++ GAH   +NS  +G   +G+Y T       +   K L+ 
Sbjct: 83  IGYNFLIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAKGLLS 142

Query: 435 YAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
            AV+  +I   YIL GHR  V +TECPG  +++ I+TW ++
Sbjct: 143 DAVSRGQIVSGYILYGHR-QVGSTECPGTNIWNEIRTWSNW 182

>sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-alpha precursor (Peptidoglycan
           recognition protein intermediate alpha) (PGRP-I-alpha)
           (PGLYRPIalpha) (Peptidoglycan recognition protein 3)
          Length = 341

 Score =  124 bits (311), Expect = 2e-28
 Identities = 65/161 (40%), Positives = 89/161 (55%)
 Frame = +3

Query: 75  VTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           + R  W A   T   K+    KYV I H+    +C   + C   ++ IQ+ HM+T  + D
Sbjct: 182 IKRSAWEA-RETHCPKMNLPAKYVIIIHT-AGTSCTVSTDCQTVVRNIQSFHMDTRNFCD 239

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
           IGY F +G DG VY G GW + G+HT G+N + LG   IG +  + PN  AL   + LI 
Sbjct: 240 IGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQ 299

Query: 435 YAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
            AV    +  NY+L GH D+V     PGQALY++I TWPH+
Sbjct: 300 CAVVEGYLTPNYLLMGHSDVVNILS-PGQALYNIISTWPHF 339


 Score = 94.0 bits (232), Expect = 3e-19
 Identities = 47/133 (35%), Positives = 71/133 (53%)
 Frame = +3

Query: 75  VTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           V+R++WGA      + LT +P    I        C   S CS  ++ +Q+  + T GW D
Sbjct: 24  VSRKEWGARPLACRALLT-LPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCD 82

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
           + Y+F +G DGRVY G GW++ G HT+GYN++ LG    G+     P+  AL+  + LI 
Sbjct: 83  VAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGLIS 142

Query: 435 YAVTNKKIDKNYI 473
           YA+    +   YI
Sbjct: 143 YAIQKGHLSPRYI 155

>sp|O75594|PGRP_HUMAN Peptidoglycan recognition protein precursor (PGRP-S)
          Length = 196

 Score =  124 bits (310), Expect = 3e-28
 Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
 Frame = +3

Query: 75  VTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
           V R +W A+++     L+   +YV + H+    +C   +SC    + +Q+ HM T GW D
Sbjct: 34  VPRNEWKALASECAQHLSLPLRYVVVSHT-AGSSCNTPASCQQQARNVQHYHMKTLGWCD 92

Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKG-YNSVGLGFLVIGDYRTELPNDLALNTLKQLI 431
           +GY+F IG DG VY GRGW+  GAH+   +N + +G   +G+Y   +P   A+   + L+
Sbjct: 93  VGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLL 152

Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
              V    +  NY+L+GHRD V  T  PG  LY LI+ WPHY
Sbjct: 153 ACGVAQGALRSNYVLKGHRD-VQRTLSPGNQLYHLIQNWPHY 193

>sp|Q9GK12|PGRP_CAMDR Peptidoglycan recognition protein precursor (Peptidoglycan
           recognition protein short) (PGRP-S)
          Length = 193

 Score =  122 bits (307), Expect = 6e-28
 Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
 Frame = +3

Query: 15  LLIWTCLIMTLFELSNAFE-------FVTRQQWGAVSATSESKLTSIPKYVFIHHSYIPP 173
           LL+W   ++ L  L  A E        V R++W A+++    +LT   +YV + H+    
Sbjct: 7   LLVWA--LLALLSLGAAREDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHT-AGS 63

Query: 174 ACYDLSSCSNAMKEIQNLHMNTNGWSDIGYSFAIGGDGRVYVGRGWDLAGAHT-KGYNSV 350
            C   +SC+   + +Q+ H+   GW D+GY+F IG DG VY GRGW++ GAH    +N +
Sbjct: 64  HCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPI 123

Query: 351 GLGFLVIGDYRTELPNDLALNTLKQLIDYAVTNKKIDKNYILRGHRDMVTTTECPGQALY 530
            +G   +G+Y   +P   AL   + L+   V    +  NY ++GHRD V  T  PG  LY
Sbjct: 124 SIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRD-VQPTLSPGDRLY 182

Query: 531 DLIKTWPHY 557
           ++I+TW HY
Sbjct: 183 EIIQTWSHY 191

>sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1a/b precursor
          Length = 185

 Score =  121 bits (304), Expect = 1e-27
 Identities = 61/185 (32%), Positives = 100/185 (54%)
 Frame = +3

Query: 3   ITKNLLIWTCLIMTLFELSNAFEFVTRQQWGAVSATSESKLTSIPKYVFIHHSYIPPACY 182
           ++K  L+   L+ + +     +  V++ +WG   A     L +   Y  IHH+     C 
Sbjct: 2   VSKVALLLAVLVCSQYMAQGVY-VVSKAEWGGRGAKWTVALGNYLSYAIIHHT-AGSYCE 59

Query: 183 DLSSCSNAMKEIQNLHMNTNGWSDIGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGF 362
             + C+  ++ +Q  HM++ GW DIGY+F IGGDG VY GRGW+  GAH   +N   +G 
Sbjct: 60  TRAQCNAVLQSVQAYHMDSLGWPDIGYNFLIGGDGNVYEGRGWNNMGAHAAEWNPYSIGI 119

Query: 363 LVIGDYRTELPNDLALNTLKQLIDYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIK 542
             +G+Y  +      ++  +QL++ AV   ++   YIL GHR  V+ TECPG  +++ I+
Sbjct: 120 SFLGNYNWDTLEPNMISAAQQLLNDAVNRGQLSSGYILYGHR-QVSATECPGTHIWNEIR 178

Query: 543 TWPHY 557
            W H+
Sbjct: 179 GWSHW 183

  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,643,029
Number of Sequences: 369166
Number of extensions: 944148
Number of successful extensions: 2435
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2397
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

Cluster detail

DrC_00004

  1. Dr_sW_024_F07
  2. Dr_sW_001_B04