Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_001_B04
(639 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB ... 157 2e-38
sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase pr... 155 6e-38
sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1... 147 2e-35
sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase prec... 146 5e-35
sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase pr... 145 7e-35
sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2... 136 5e-32
sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-a... 125 9e-29
sp|O75594|PGRP_HUMAN Peptidoglycan recognition protein prec... 124 2e-28
sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1... 122 1e-27
sp|Q9GK12|PGRP_CAMDR Peptidoglycan recognition protein prec... 121 1e-27
>sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB precursor
Length = 232
Score = 157 bits (397), Expect = 2e-38
Identities = 74/161 (45%), Positives = 96/161 (59%)
Frame = +3
Query: 75 VTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
++R WGA SV YV IHHSY+P CY C +M+++Q+ H GW+D
Sbjct: 33 LSRSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWND 92
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
IGYSF IGGDG +Y GRG+++ GAH YN +G ++IGD+RTELP L+ K LI
Sbjct: 93 IGYSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIA 152
Query: 435 YAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
+ V ID Y L GHR V TECPG L+ I +WPH+
Sbjct: 153 FGVFKGYIDPAYKLLGHR-QVRDTECPGGRLFAEISSWPHF 192
>sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2)
Length = 576
Score = 155 bits (393), Expect = 6e-38
Identities = 73/162 (45%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
Frame = +3
Query: 81 RQQWGAVSATSVSKLTSIPK-YVFIHHSYIP-PACYDLSSCSNAMKEIQNLHMNTNGWSD 254
R +WGA KL +P ++++HH+Y+P P C D + C+ M+ +Q H +T GW D
Sbjct: 385 RCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGD 444
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQ-LI 431
IGYSF +G DG VY GRGW GAHT G+NS G G ++G+Y LP + AL T++ L
Sbjct: 445 IGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTLP 504
Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
AV + +Y L GHR +V T+CPG AL+DL++TWPH+
Sbjct: 505 SCAVRAGLLRPDYALLGHRQLV-RTDCPGDALFDLLRTWPHF 545
>sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1 precursor
Length = 190
Score = 147 bits (371), Expect = 2e-35
Identities = 74/180 (41%), Positives = 100/180 (55%)
Frame = +3
Query: 18 LIWTCLIMTLFELSNAFEFVTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACYDLSSC 197
L+ CL ++ +NA + R WGAVSA S S+++ YV IHHS P C C
Sbjct: 13 LVLCCLALS----ANALQIEPRSSWGAVSARSPSRISGAVDYVIIHHSDNPNGCSTSEQC 68
Query: 198 SNAMKEIQNLHMNTNGWSDIGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGD 377
+K IQ+ H +SDIGY+F + GDG+VY GRG+ L G+H+ YN +G + IG+
Sbjct: 69 KRMIKNIQSDHKGRRNFSDIGYNFIVAGDGKVYEGRGFGLQGSHSPNYNRKSIGIVFIGN 128
Query: 378 YRTELPNDLALNTLKQLIDYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
+ P+ L K LI+ A + NY L GHR T CPG ALY+ IKTWPH+
Sbjct: 129 FERSAPSAQMLQNAKDLIELAKQRGYLKDNYTLFGHR-QTKATSCPGDALYNEIKTWPHW 187
>sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2)
Length = 598
Score = 146 bits (368), Expect = 5e-35
Identities = 69/162 (42%), Positives = 102/162 (62%), Gaps = 3/162 (1%)
Frame = +3
Query: 81 RQQWGAVSATSVSKLTSIPK-YVFIHHSYIPPA-CYDLSSCSNAMKEIQNLHMNTNGWSD 254
R +WGA K +P +++IHH+Y+P C D + C+ M+ +Q H++T GW D
Sbjct: 407 RCRWGAAPYRGSPKPLKLPLGFLYIHHTYVPARPCTDFALCAANMRSMQRFHLDTQGWDD 466
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLK-QLI 431
IGYSF +G DG VY GRGW GAHT+ +NS G G +IG+Y ELP++ AL ++ +L
Sbjct: 467 IGYSFVVGSDGYVYEGRGWHWVGAHTRDHNSRGFGVALIGNYTAELPSEAALRAVRDELP 526
Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
AV + +Y L GHR +V T+CPG AL+++++TWP +
Sbjct: 527 HCAVRAGLLQPDYALLGHRQLV-RTDCPGDALFNMLRTWPRF 567
>sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2) (TagL)
Length = 530
Score = 145 bits (367), Expect = 7e-35
Identities = 69/162 (42%), Positives = 98/162 (60%), Gaps = 3/162 (1%)
Frame = +3
Query: 81 RQQWGAVSATSVSKLTSIPK-YVFIHHSYIP-PACYDLSSCSNAMKEIQNLHMNTNGWSD 254
R +WGA +P ++++HH+Y+P P C SC+ M+ +Q H + W D
Sbjct: 365 RCRWGAAPYRGHPTPLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVRKWDD 424
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQ-LI 431
IGYSF +G DG +Y GRGW GAHT+GYNS G G +G+Y LPN+ ALNT++ L
Sbjct: 425 IGYSFVVGSDGYLYQGRGWHWVGAHTRGYNSRGFGVAFVGNYTGSLPNEAALNTVRDALP 484
Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
A+ + +Y L GHR +V T CPG AL++L++TWPH+
Sbjct: 485 SCAIRAGLLRPDYKLLGHRQLV-LTHCPGNALFNLLRTWPHF 525
>sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2 precursor
Length = 184
Score = 136 bits (342), Expect = 5e-32
Identities = 67/161 (41%), Positives = 96/161 (59%)
Frame = +3
Query: 75 VTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
V++ +WG SATS + L S Y IHH+ C ++C +K IQ HM++ GW+D
Sbjct: 24 VSKSEWGGRSATSKTSLASYLSYAVIHHT-AGNYCSTKAACITQLKNIQAYHMDSLGWAD 82
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
IGY+F IGGDG VY GRGW++ GAH +NS +G +G+Y T + K L+
Sbjct: 83 IGYNFLIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAKGLLS 142
Query: 435 YAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
AV+ +I YIL GHR V +TECPG +++ I+TW ++
Sbjct: 143 DAVSRGQIVSGYILYGHR-QVGSTECPGTNIWNEIRTWSNW 182
>sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-alpha precursor (Peptidoglycan
recognition protein intermediate alpha) (PGRP-I-alpha)
(PGLYRPIalpha) (Peptidoglycan recognition protein 3)
Length = 341
Score = 125 bits (314), Expect = 9e-29
Identities = 65/161 (40%), Positives = 89/161 (55%)
Frame = +3
Query: 75 VTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
+ R W A T K+ KYV I H+ +C + C ++ IQ+ HM+T + D
Sbjct: 182 IKRSAWEA-RETHCPKMNLPAKYVIIIHT-AGTSCTVSTDCQTVVRNIQSFHMDTRNFCD 239
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
IGY F +G DG VY G GW + G+HT G+N + LG IG + + PN AL + LI
Sbjct: 240 IGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQ 299
Query: 435 YAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
AV + NY+L GH D+V PGQALY++I TWPH+
Sbjct: 300 CAVVEGYLTPNYLLMGHSDVVNILS-PGQALYNIISTWPHF 339
Score = 92.8 bits (229), Expect = 7e-19
Identities = 47/133 (35%), Positives = 71/133 (53%)
Frame = +3
Query: 75 VTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
V+R++WGA + LT +P I C S CS ++ +Q+ + T GW D
Sbjct: 24 VSRKEWGARPLACRALLT-LPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCD 82
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLID 434
+ Y+F +G DGRVY G GW++ G HT+GYN++ LG G+ P+ AL+ + LI
Sbjct: 83 VAYNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGLIS 142
Query: 435 YAVTNKKIDKNYI 473
YA+ + YI
Sbjct: 143 YAIQKGHLSPRYI 155
>sp|O75594|PGRP_HUMAN Peptidoglycan recognition protein precursor (PGRP-S)
Length = 196
Score = 124 bits (311), Expect = 2e-28
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 1/162 (0%)
Frame = +3
Query: 75 VTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSD 254
V R +W A+++ L+ +YV + H+ +C +SC + +Q+ HM T GW D
Sbjct: 34 VPRNEWKALASECAQHLSLPLRYVVVSHT-AGSSCNTPASCQQQARNVQHYHMKTLGWCD 92
Query: 255 IGYSFAIGGDGRVYVGRGWDLAGAHTKG-YNSVGLGFLVIGDYRTELPNDLALNTLKQLI 431
+GY+F IG DG VY GRGW+ GAH+ +N + +G +G+Y +P A+ + L+
Sbjct: 93 VGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLL 152
Query: 432 DYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIKTWPHY 557
V + NY+L+GHRD V T PG LY LI+ WPHY
Sbjct: 153 ACGVAQGALRSNYVLKGHRD-VQRTLSPGNQLYHLIQNWPHY 193
>sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1a/b precursor
Length = 185
Score = 122 bits (305), Expect = 1e-27
Identities = 61/185 (32%), Positives = 100/185 (54%)
Frame = +3
Query: 3 ITKNLLIWTCLIMTLFELSNAFEFVTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPPACY 182
++K L+ L+ + + + V++ +WG A L + Y IHH+ C
Sbjct: 2 VSKVALLLAVLVCSQYMAQGVY-VVSKAEWGGRGAKWTVALGNYLSYAIIHHT-AGSYCE 59
Query: 183 DLSSCSNAMKEIQNLHMNTNGWSDIGYSFAIGGDGRVYVGRGWDLAGAHTKGYNSVGLGF 362
+ C+ ++ +Q HM++ GW DIGY+F IGGDG VY GRGW+ GAH +N +G
Sbjct: 60 TRAQCNAVLQSVQAYHMDSLGWPDIGYNFLIGGDGNVYEGRGWNNMGAHAAEWNPYSIGI 119
Query: 363 LVIGDYRTELPNDLALNTLKQLIDYAVTNKKIDKNYILRGHRDMVTTTECPGQALYDLIK 542
+G+Y + ++ +QL++ AV ++ YIL GHR V+ TECPG +++ I+
Sbjct: 120 SFLGNYNWDTLEPNMISAAQQLLNDAVNRGQLSSGYILYGHR-QVSATECPGTHIWNEIR 178
Query: 543 TWPHY 557
W H+
Sbjct: 179 GWSHW 183
>sp|Q9GK12|PGRP_CAMDR Peptidoglycan recognition protein precursor (Peptidoglycan
recognition protein short) (PGRP-S)
Length = 193
Score = 121 bits (304), Expect = 1e-27
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 8/189 (4%)
Frame = +3
Query: 15 LLIWTCLIMTLFELSNAFE-------FVTRQQWGAVSATSVSKLTSIPKYVFIHHSYIPP 173
LL+W ++ L L A E V R++W A+++ +LT +YV + H+
Sbjct: 7 LLVWA--LLALLSLGAAREDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHT-AGS 63
Query: 174 ACYDLSSCSNAMKEIQNLHMNTNGWSDIGYSFAIGGDGRVYVGRGWDLAGAHT-KGYNSV 350
C +SC+ + +Q+ H+ GW D+GY+F IG DG VY GRGW++ GAH +N +
Sbjct: 64 HCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPI 123
Query: 351 GLGFLVIGDYRTELPNDLALNTLKQLIDYAVTNKKIDKNYILRGHRDMVTTTECPGQALY 530
+G +G+Y +P AL + L+ V + NY ++GHRD V T PG LY
Sbjct: 124 SIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRD-VQPTLSPGDRLY 182
Query: 531 DLIKTWPHY 557
++I+TW HY
Sbjct: 183 EIIQTWSHY 191
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,053,603
Number of Sequences: 369166
Number of extensions: 958434
Number of successful extensions: 2491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2453
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5169945420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)