Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_024_F07
(429 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB ... 124 6e-29
sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase pr... 122 4e-28
sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase prec... 116 2e-26
sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase pr... 115 3e-26
sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2... 106 2e-23
sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1... 105 3e-23
sp|Q96LB8|PGRP4_HUMAN Peptidoglycan recognition protein I-b... 101 6e-22
sp|Q9VYX7|PGPSA_DROME Peptidoglycan-recognition protein-SA ... 94 9e-20
sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-a... 89 5e-18
sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1... 88 7e-18
>sp|Q8INK6|PGPLB_DROME Peptidoglycan-recognition protein-LB precursor
Length = 232
Score = 124 bits (312), Expect = 6e-29
Identities = 55/121 (45%), Positives = 73/121 (60%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
R WGA S YV IHHSY+P CY C +M+++Q+ H GW+DIG
Sbjct: 35 RSDWGARLPKSVEHFQGPAPYVIIHHSYMPAVCYSTPDCMKSMRDMQDFHQLERGWNDIG 94
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
YSF IGGDG +Y GRG++++GAH YN +G ++IGD+RTELP L+ K LI +
Sbjct: 95 YSFGIGGDGMIYTGRGFNVIGAHAPKYNDKSVGIVLIGDWRTELPPKQMLDAAKNLIAFG 154
Query: 361 V 363
V
Sbjct: 155 V 155
>sp|Q96PD5|PGRP2_HUMAN N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2)
Length = 576
Score = 122 bits (305), Expect = 4e-28
Identities = 53/119 (44%), Positives = 75/119 (63%), Gaps = 2/119 (1%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPK-YVFIHHSYIP-PACYDLSSCSNAMKEIQNLHMNTNGWSD 174
R +WGA KL +P ++++HH+Y+P P C D + C+ M+ +Q H +T GW D
Sbjct: 385 RCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQDTQGWGD 444
Query: 175 IGYSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLI 351
IGYSF +G DG VY GRGW VGAHT G+NS G G ++G+Y LP + AL T++ +
Sbjct: 445 IGYSFVVGSDGYVYEGRGWHWVGAHTLGHNSRGFGVAIVGNYTAALPTEAALRTVRDTL 503
>sp|Q866Y3|PGRP2_PIG N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2)
Length = 598
Score = 116 bits (290), Expect = 2e-26
Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 2/116 (1%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPK-YVFIHHSYIPPA-CYDLSSCSNAMKEIQNLHMNTNGWSD 174
R +WGA K +P +++IHH+Y+P C D + C+ M+ +Q H++T GW D
Sbjct: 407 RCRWGAAPYRGSPKPLKLPLGFLYIHHTYVPARPCTDFALCAANMRSMQRFHLDTQGWDD 466
Query: 175 IGYSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLK 342
IGYSF +G DG VY GRGW VGAHT+ +NS G G +IG+Y ELP++ AL ++
Sbjct: 467 IGYSFVVGSDGYVYEGRGWHWVGAHTRDHNSRGFGVALIGNYTAELPSEAALRAVR 522
>sp|Q8VCS0|PGRP2_MOUSE N-acetylmuramoyl-L-alanine amidase precursor (Peptidoglycan
recognition protein long) (PGRP-L) (Peptidoglycan
recognition protein 2) (TagL)
Length = 530
Score = 115 bits (289), Expect = 3e-26
Identities = 51/119 (42%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPK-YVFIHHSYIP-PACYDLSSCSNAMKEIQNLHMNTNGWSD 174
R +WGA +P ++++HH+Y+P P C SC+ M+ +Q H + W D
Sbjct: 365 RCRWGAAPYRGHPTPLRLPLGFLYVHHTYVPAPPCTTFQSCAADMRSMQRFHQDVRKWDD 424
Query: 175 IGYSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLI 351
IGYSF +G DG +Y GRGW VGAHT+GYNS G G +G+Y LPN+ ALNT++ +
Sbjct: 425 IGYSFVVGSDGYLYQGRGWHWVGAHTRGYNSRGFGVAFVGNYTGSLPNEAALNTVRDAL 483
>sp|Q70PU1|PGSC2_DROSI Peptidoglycan-recognition protein-SC2 precursor
Length = 184
Score = 106 bits (264), Expect = 2e-23
Identities = 50/122 (40%), Positives = 72/122 (59%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
+ +WG SATS++ L S Y IHH+ C ++C +K IQ HM++ GW+DIG
Sbjct: 26 KSEWGGRSATSKTSLASYLSYAVIHHT-AGNYCSTKAACITQLKNIQAYHMDSLGWADIG 84
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
Y+F IGGDG VY GRGW+++GAH +NS +G +G+Y T + K L+ A
Sbjct: 85 YNFLIGGDGNVYEGRGWNVMGAHATNWNSKSIGISFLGNYNTNTLTSAQITAAKGLLSDA 144
Query: 361 VT 366
V+
Sbjct: 145 VS 146
>sp|Q70PY2|PGSB1_DROME Peptidoglycan-recognition protein-SB1 precursor
Length = 190
Score = 105 bits (263), Expect = 3e-23
Identities = 50/120 (41%), Positives = 68/120 (56%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
R WGAVSA S S+++ YV IHHS P C C +K IQ+ H +SDIG
Sbjct: 30 RSSWGAVSARSPSRISGAVDYVIIHHSDNPNGCSTSEQCKRMIKNIQSDHKGRRNFSDIG 89
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
Y+F + GDG+VY GRG+ L G+H+ YN +G + IG++ P+ L K LI+ A
Sbjct: 90 YNFIVAGDGKVYEGRGFGLQGSHSPNYNRKSIGIVFIGNFERSAPSAQMLQNAKDLIELA 149
>sp|Q96LB8|PGRP4_HUMAN Peptidoglycan recognition protein I-beta precursor (Peptidoglycan
recognition protein intermediate beta) (PGRP-I-beta)
(PGLYRPIbeta) (Peptidoglycan recognition protein 4)
Length = 373
Score = 101 bits (252), Expect = 6e-22
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 1/122 (0%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPA-CYDLSSCSNAMKEIQNLHMNTNGWSDI 177
R+ WGA + +LT+ + IHH +P C+D + CS ++E+Q H++ N D+
Sbjct: 58 RKAWGAEAVGCSIQLTTPVNVLVIHH--VPGLECHDQTVCSQRLRELQAHHVHNNSGCDV 115
Query: 178 GYSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDY 357
Y+F +G DGRVY G GW++ G HT+GYN++ LGF G + P+ AL+ ++ LI Y
Sbjct: 116 AYNFLVGDDGRVYEGVGWNIQGVHTQGYNNISLGFAFFGTKKGHSPSPAALSAMENLITY 175
Query: 358 AV 363
AV
Sbjct: 176 AV 177
Score = 69.3 bits (168), Expect = 3e-12
Identities = 40/121 (33%), Positives = 62/121 (51%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
R WGA T ++T KY I H+ C C +++IQ+ +++ DIG
Sbjct: 216 RSVWGA-RETHCPRMTLPAKYGIIIHT-AGRTCNISDECRLLVRDIQSFYIDRLKSCDIG 273
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
Y+F +G DG +Y G GW++ G+ T GY+ + LG +G + PN AL + LI A
Sbjct: 274 YNFLVGQDGAIYEGVGWNVQGSSTPGYDDIALGITFMGTFTGIPPNAAALEAAQDLIQCA 333
Query: 361 V 363
+
Sbjct: 334 M 334
>sp|Q9VYX7|PGPSA_DROME Peptidoglycan-recognition protein-SA precursor (Protein semmelweis)
Length = 203
Score = 94.4 bits (233), Expect = 9e-20
Identities = 46/117 (39%), Positives = 66/117 (56%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
++QWG + +YV IHH+ + C L C+ ++ +Q H N ++DI
Sbjct: 43 KRQWGGKPSLGLHYQVRPIRYVVIHHT-VTGECSGLLKCAEILQNMQAYHQNELDFNDIS 101
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLI 351
Y+F IG DG VY G GW L GAHT GYN++G G IG++ +LP+D AL K L+
Sbjct: 102 YNFLIGNDGIVYEGTGWGLRGAHTYGYNAIGTGIAFIGNFVDKLPSDAALQAAKDLL 158
>sp|Q96LB9|PGRP3_HUMAN Peptidoglycan recognition protein I-alpha precursor (Peptidoglycan
recognition protein intermediate alpha) (PGRP-I-alpha)
(PGLYRPIalpha) (Peptidoglycan recognition protein 3)
Length = 341
Score = 88.6 bits (218), Expect = 5e-18
Identities = 44/121 (36%), Positives = 66/121 (54%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
R++WGA + LT +P I C S CS ++ +Q+ + T GW D+
Sbjct: 26 RKEWGARPLACRALLT-LPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCDVA 84
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
Y+F +G DGRVY G GW++ G HT+GYN++ LG G+ P+ AL+ + LI YA
Sbjct: 85 YNFLVGDDGRVYEGVGWNIQGLHTQGYNNISLGIAFFGNKIGSSPSPAALSAAEGLISYA 144
Query: 361 V 363
+
Sbjct: 145 I 145
Score = 85.5 bits (210), Expect = 4e-17
Identities = 47/121 (38%), Positives = 64/121 (52%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
R W A T K+ KYV I H+ +C + C ++ IQ+ HM+T + DIG
Sbjct: 184 RSAWEA-RETHCPKMNLPAKYVIIIHT-AGTSCTVSTDCQTVVRNIQSFHMDTRNFCDIG 241
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
Y F +G DG VY G GW + G+HT G+N + LG IG + + PN AL + LI A
Sbjct: 242 YHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQDLIQCA 301
Query: 361 V 363
V
Sbjct: 302 V 302
>sp|Q70PU2|PGSC1_DROSI Peptidoglycan-recognition protein-SC1a/b precursor
Length = 185
Score = 88.2 bits (217), Expect = 7e-18
Identities = 42/121 (34%), Positives = 66/121 (54%)
Frame = +1
Query: 1 RQQWGAVSATSESKLTSIPKYVFIHHSYIPPACYDLSSCSNAMKEIQNLHMNTNGWSDIG 180
+ +WG A L + Y IHH+ C + C+ ++ +Q HM++ GW DIG
Sbjct: 27 KAEWGGRGAKWTVALGNYLSYAIIHHT-AGSYCETRAQCNAVLQSVQAYHMDSLGWPDIG 85
Query: 181 YSFAIGGDGRVYVGRGWDLVGAHTKGYNSVGLGFLVIGDYRTELPNDLALNTLKQLIDYA 360
Y+F IGGDG VY GRGW+ +GAH +N +G +G+Y + ++ +QL++ A
Sbjct: 86 YNFLIGGDGNVYEGRGWNNMGAHAAEWNPYSIGISFLGNYNWDTLEPNMISAAQQLLNDA 145
Query: 361 V 363
V
Sbjct: 146 V 146
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,550,597
Number of Sequences: 369166
Number of extensions: 674120
Number of successful extensions: 1682
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1671
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2095022160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)