Planaria EST Database


DrC_03072

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03072
         (538 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q26630|IDLC_STRPU  33 kDa inner dynein arm light chain, a...   224   1e-58
sp|Q4R3K5|IDLC_MACFA  Axonemal dynein light intermediate pol...   204   1e-52
sp|O14645|IDLC_HUMAN  Axonemal dynein light intermediate pol...   203   2e-52
sp|Q4FZV3|IDLC_RAT  Axonemal dynein light intermediate polyp...   201   7e-52
sp|Q8BVN8|IDLC_MOUSE  Axonemal dynein light intermediate pol...   196   2e-50
sp|Q39604|IDLC_CHLRE  28 kDa inner dynein arm light chain, a...   180   2e-45
sp|Q9VGG6|IDLC_DROME  Putative inner dynein arm light chain,...   166   4e-41
>sp|Q26630|IDLC_STRPU 33 kDa inner dynein arm light chain, axonemal (p33)
          Length = 260

 Score =  224 bits (570), Expect = 1e-58
 Identities = 120/176 (68%), Positives = 130/176 (73%), Gaps = 5/176 (2%)
 Frame = +1

Query: 25  LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXX---- 192
           +P NASLVKYDNPVLV+RNT+KKTPRA+ALK S Q   + G +                 
Sbjct: 2   IPPNASLVKYDNPVLVSRNTEKKTPRARALKTSPQQPTNAGPVPNPPPKGGSKLPPVESQ 61

Query: 193 -NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGI 369
             QQT+EILNSILPpreWTE  QLWVQQVS+TPATRLDVVN+               TGI
Sbjct: 62  KAQQTDEILNSILPpreWTESGQLWVQQVSSTPATRLDVVNLQEQLDMRLQQRQARETGI 121

Query: 370 CPVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
           CPVRRELYSQ FDELIRQVTI CAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 CPVRRELYSQCFDELIRQVTIECAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 177
>sp|Q4R3K5|IDLC_MACFA Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
           light chain, axonemal)
          Length = 258

 Score =  204 bits (519), Expect = 1e-52
 Identities = 106/175 (60%), Positives = 126/175 (72%), Gaps = 4/175 (2%)
 Frame = +1

Query: 25  LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNG----IMXXXXXXXXXXXXX 192
           +P   SL+KYD PVLV+RNT+K++P+A+ LKVS Q    +G    +              
Sbjct: 2   IPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQPGPSGSAPQLPKTKLPSAPCVPDP 61

Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
            +Q EEILN+ILPpreW E  QLW+QQVS+TP+TR+DVV++               TGIC
Sbjct: 62  TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121

Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
           PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 176
>sp|O14645|IDLC_HUMAN Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
           light chain, axonemal) (hp28)
          Length = 258

 Score =  203 bits (516), Expect = 2e-52
 Identities = 106/175 (60%), Positives = 125/175 (71%), Gaps = 4/175 (2%)
 Frame = +1

Query: 25  LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXX---- 192
           +P   SL+KYD PVLV+RNT+K++P+A+ LKVS Q    +G                   
Sbjct: 2   IPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQPGPSGSAPQPPKTKLPSTPCVPDP 61

Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
            +Q EEILN+ILPpreW E  QLW+QQVS+TP+TR+DVV++               TGIC
Sbjct: 62  TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121

Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
           PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 176
>sp|Q4FZV3|IDLC_RAT Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
           light chain, axonemal)
          Length = 258

 Score =  201 bits (512), Expect = 7e-52
 Identities = 105/175 (60%), Positives = 125/175 (71%), Gaps = 4/175 (2%)
 Frame = +1

Query: 25  LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGI----MXXXXXXXXXXXXX 192
           +P   SL+KYD PVLV+RNT+K++P+A+ LKV+ Q    +G                   
Sbjct: 2   IPPADSLLKYDTPVLVSRNTEKRSPKARPLKVTVQQPGPSGAGPQPPKAKLPSTSCVPDP 61

Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
            +Q EEILN+ILPpreW E  QLW+QQVS+TP+TR+DVV++               TGIC
Sbjct: 62  TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121

Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
           PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 176
>sp|Q8BVN8|IDLC_MOUSE Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
           light chain, axonemal)
          Length = 258

 Score =  196 bits (499), Expect = 2e-50
 Identities = 103/175 (58%), Positives = 122/175 (69%), Gaps = 4/175 (2%)
 Frame = +1

Query: 25  LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXX---- 192
           +P   SL+KYD PVLV+RNT+K++P A+ LKV+ Q    +                    
Sbjct: 2   IPPADSLLKYDTPVLVSRNTEKRSPTARPLKVTIQQPGPSSTSPQPPKAKLPSTSCVPDP 61

Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
            +Q EEILN+ILPpreW E  QLW+QQVS+TP+TR+DVV++               TGIC
Sbjct: 62  TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121

Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
           PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEI MTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIHMTIAAYQTLYESSVAFGM 176
>sp|Q39604|IDLC_CHLRE 28 kDa inner dynein arm light chain, axonemal (p28)
          Length = 253

 Score =  180 bits (457), Expect = 2e-45
 Identities = 98/171 (57%), Positives = 115/171 (67%)
 Frame = +1

Query: 25  LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXXNQQT 204
           +P  +SLV+YDNPVLV+ + DK        K +       G +               QT
Sbjct: 2   IPPLSSLVRYDNPVLVSTSKDKG-------KGAKGTPGKKGALPPVEQKPGLT-----QT 49

Query: 205 EEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGICPVRR 384
           E+ILNSILPpreWTE  QLWVQ VS+TPATRLDV+N+               TGICP+R 
Sbjct: 50  EDILNSILPpreWTEDGQLWVQYVSSTPATRLDVINLQEKLDQQLQQRQARETGICPIRE 109

Query: 385 ELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
           ELY+Q FDELIRQVTINCAERGLLLLRVRDE+RMTI+AYQTLYES+VAFG+
Sbjct: 110 ELYAQTFDELIRQVTINCAERGLLLLRVRDEMRMTIAAYQTLYESAVAFGI 160
>sp|Q9VGG6|IDLC_DROME Putative inner dynein arm light chain, axonemal
          Length = 250

 Score =  166 bits (419), Expect = 4e-41
 Identities = 90/166 (54%), Positives = 110/166 (66%)
 Frame = +1

Query: 40  SLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXXNQQTEEILN 219
           +LV+Y+NPVLV ++ DKK   A   ++  +     G +              ++TEEILN
Sbjct: 14  TLVRYNNPVLVVKHPDKKGG-APLTEIEMKRPQTAGALLDT----------KRETEEILN 62

Query: 220 SILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGICPVRRELYSQ 399
           SILPPR W E  QLW Q VS+TPATR DV+N+               TGICPVRRELYSQ
Sbjct: 63  SILPPRCWEEDGQLWQQSVSSTPATRQDVINLQEMLDTRLQQTQARETGICPVRRELYSQ 122

Query: 400 VFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
            FDE+IRQVTINC+ERGLLLLR+RDEI M++ AY+TLY SSVAFGM
Sbjct: 123 CFDEIIRQVTINCSERGLLLLRIRDEIAMSMEAYETLYCSSVAFGM 168
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.317    0.130    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,234,523
Number of Sequences: 369166
Number of extensions: 821977
Number of successful extensions: 1646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)