Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_O14
(538 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q26630|IDLC_STRPU 33 kDa inner dynein arm light chain, a... 224 1e-58
sp|Q4R3K5|IDLC_MACFA Axonemal dynein light intermediate pol... 204 1e-52
sp|O14645|IDLC_HUMAN Axonemal dynein light intermediate pol... 203 2e-52
sp|Q4FZV3|IDLC_RAT Axonemal dynein light intermediate polyp... 201 7e-52
sp|Q8BVN8|IDLC_MOUSE Axonemal dynein light intermediate pol... 196 2e-50
sp|Q39604|IDLC_CHLRE 28 kDa inner dynein arm light chain, a... 180 2e-45
sp|Q9VGG6|IDLC_DROME Putative inner dynein arm light chain,... 166 4e-41
>sp|Q26630|IDLC_STRPU 33 kDa inner dynein arm light chain, axonemal (p33)
Length = 260
Score = 224 bits (570), Expect = 1e-58
Identities = 120/176 (68%), Positives = 130/176 (73%), Gaps = 5/176 (2%)
Frame = +1
Query: 25 LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXX---- 192
+P NASLVKYDNPVLV+RNT+KKTPRA+ALK S Q + G +
Sbjct: 2 IPPNASLVKYDNPVLVSRNTEKKTPRARALKTSPQQPTNAGPVPNPPPKGGSKLPPVESQ 61
Query: 193 -NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGI 369
QQT+EILNSILPpreWTE QLWVQQVS+TPATRLDVVN+ TGI
Sbjct: 62 KAQQTDEILNSILPpreWTESGQLWVQQVSSTPATRLDVVNLQEQLDMRLQQRQARETGI 121
Query: 370 CPVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
CPVRRELYSQ FDELIRQVTI CAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 CPVRRELYSQCFDELIRQVTIECAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 177
>sp|Q4R3K5|IDLC_MACFA Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
light chain, axonemal)
Length = 258
Score = 204 bits (519), Expect = 1e-52
Identities = 106/175 (60%), Positives = 126/175 (72%), Gaps = 4/175 (2%)
Frame = +1
Query: 25 LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNG----IMXXXXXXXXXXXXX 192
+P SL+KYD PVLV+RNT+K++P+A+ LKVS Q +G +
Sbjct: 2 IPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQPGPSGSAPQLPKTKLPSAPCVPDP 61
Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
+Q EEILN+ILPpreW E QLW+QQVS+TP+TR+DVV++ TGIC
Sbjct: 62 TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121
Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 176
>sp|O14645|IDLC_HUMAN Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
light chain, axonemal) (hp28)
Length = 258
Score = 203 bits (516), Expect = 2e-52
Identities = 106/175 (60%), Positives = 125/175 (71%), Gaps = 4/175 (2%)
Frame = +1
Query: 25 LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXX---- 192
+P SL+KYD PVLV+RNT+K++P+A+ LKVS Q +G
Sbjct: 2 IPPADSLLKYDTPVLVSRNTEKRSPKARLLKVSPQQPGPSGSAPQPPKTKLPSTPCVPDP 61
Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
+Q EEILN+ILPpreW E QLW+QQVS+TP+TR+DVV++ TGIC
Sbjct: 62 TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121
Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 176
>sp|Q4FZV3|IDLC_RAT Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
light chain, axonemal)
Length = 258
Score = 201 bits (512), Expect = 7e-52
Identities = 105/175 (60%), Positives = 125/175 (71%), Gaps = 4/175 (2%)
Frame = +1
Query: 25 LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGI----MXXXXXXXXXXXXX 192
+P SL+KYD PVLV+RNT+K++P+A+ LKV+ Q +G
Sbjct: 2 IPPADSLLKYDTPVLVSRNTEKRSPKARPLKVTVQQPGPSGAGPQPPKAKLPSTSCVPDP 61
Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
+Q EEILN+ILPpreW E QLW+QQVS+TP+TR+DVV++ TGIC
Sbjct: 62 TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121
Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEIRMTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIRMTIAAYQTLYESSVAFGM 176
>sp|Q8BVN8|IDLC_MOUSE Axonemal dynein light intermediate polypeptide 1 (Inner dynein arm
light chain, axonemal)
Length = 258
Score = 196 bits (499), Expect = 2e-50
Identities = 103/175 (58%), Positives = 122/175 (69%), Gaps = 4/175 (2%)
Frame = +1
Query: 25 LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXX---- 192
+P SL+KYD PVLV+RNT+K++P A+ LKV+ Q +
Sbjct: 2 IPPADSLLKYDTPVLVSRNTEKRSPTARPLKVTIQQPGPSSTSPQPPKAKLPSTSCVPDP 61
Query: 193 NQQTEEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGIC 372
+Q EEILN+ILPpreW E QLW+QQVS+TP+TR+DVV++ TGIC
Sbjct: 62 TKQAEEILNAILPpreWVEDTQLWIQQVSSTPSTRMDVVHLQEQLDLKLQQRQARETGIC 121
Query: 373 PVRRELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
PVRRELYSQ FDELIR+VTINCAERGLLLLRVRDEI MTI+AYQTLYESSVAFGM
Sbjct: 122 PVRRELYSQCFDELIREVTINCAERGLLLLRVRDEIHMTIAAYQTLYESSVAFGM 176
>sp|Q39604|IDLC_CHLRE 28 kDa inner dynein arm light chain, axonemal (p28)
Length = 253
Score = 180 bits (457), Expect = 2e-45
Identities = 98/171 (57%), Positives = 115/171 (67%)
Frame = +1
Query: 25 LPSNASLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXXNQQT 204
+P +SLV+YDNPVLV+ + DK K + G + QT
Sbjct: 2 IPPLSSLVRYDNPVLVSTSKDKG-------KGAKGTPGKKGALPPVEQKPGLT-----QT 49
Query: 205 EEILNSILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGICPVRR 384
E+ILNSILPpreWTE QLWVQ VS+TPATRLDV+N+ TGICP+R
Sbjct: 50 EDILNSILPpreWTEDGQLWVQYVSSTPATRLDVINLQEKLDQQLQQRQARETGICPIRE 109
Query: 385 ELYSQVFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
ELY+Q FDELIRQVTINCAERGLLLLRVRDE+RMTI+AYQTLYES+VAFG+
Sbjct: 110 ELYAQTFDELIRQVTINCAERGLLLLRVRDEMRMTIAAYQTLYESAVAFGI 160
>sp|Q9VGG6|IDLC_DROME Putative inner dynein arm light chain, axonemal
Length = 250
Score = 166 bits (419), Expect = 4e-41
Identities = 90/166 (54%), Positives = 110/166 (66%)
Frame = +1
Query: 40 SLVKYDNPVLVTRNTDKKTPRAKALKVSSQNANDNGIMXXXXXXXXXXXXXNQQTEEILN 219
+LV+Y+NPVLV ++ DKK A ++ + G + ++TEEILN
Sbjct: 14 TLVRYNNPVLVVKHPDKKGG-APLTEIEMKRPQTAGALLDT----------KRETEEILN 62
Query: 220 SILPpreWTEKDQLWVQQVSATPATRLDVVNIXXXXXXXXXXXXXXXTGICPVRRELYSQ 399
SILPPR W E QLW Q VS+TPATR DV+N+ TGICPVRRELYSQ
Sbjct: 63 SILPPRCWEEDGQLWQQSVSSTPATRQDVINLQEMLDTRLQQTQARETGICPVRRELYSQ 122
Query: 400 VFDELIRQVTINCAERGLLLLRVRDEIRMTISAYQTLYESSVAFGM 537
FDE+IRQVTINC+ERGLLLLR+RDEI M++ AY+TLY SSVAFGM
Sbjct: 123 CFDEIIRQVTINCSERGLLLLRIRDEIAMSMEAYETLYCSSVAFGM 168
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,234,523
Number of Sequences: 369166
Number of extensions: 821977
Number of successful extensions: 1646
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1639
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3699545625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)