Planaria EST Database


DrC_03064

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03064
         (310 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P75072|Y042_MYCPN  Hypothetical protein MPN042 (B01_orf672)     30   2.3  
sp|Q7G9P4|ALDO3_ARATH  Aldehyde oxidase 3 (AtAO-3) (AtAO4)         29   3.0  
sp|P38734|MUP3_YEAST  Low-affinity methionine permease             28   8.6  
>sp|P75072|Y042_MYCPN Hypothetical protein MPN042 (B01_orf672)
          Length = 672

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -1

Query: 247 FFLTYTHDGTIVISWEPKTCKNLCTSRAAYYFNSQVQRGFVVPHLVDKLS 98
           F +TY+ DG +V SW+     ++      Y FN Q Q+   VPH + K++
Sbjct: 581 FKVTYSFDG-VVPSWK---YGHIQVRTPQYSFNKQEQKILFVPHAIQKIA 626
>sp|Q7G9P4|ALDO3_ARATH Aldehyde oxidase 3 (AtAO-3) (AtAO4)
          Length = 1332

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 11/46 (23%), Positives = 26/46 (56%)
 Frame = -1

Query: 211  ISWEPKTCKNLCTSRAAYYFNSQVQRGFVVPHLVDKLSFTLVLVIE 74
            +S++ K CK  C SR A     +VQ  ++   +++ ++ +L + ++
Sbjct: 895  LSFDVKVCKTNCLSRTAMRAPGEVQGSYIAESIIENVASSLQMDVD 940
>sp|P38734|MUP3_YEAST Low-affinity methionine permease
          Length = 546

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 241 LTYTHDGTIVISWEPKTC 188
           +TY HDG IV  W  K C
Sbjct: 527 ITYLHDGLIVTEWVKKPC 544
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,490,447
Number of Sequences: 369166
Number of extensions: 665658
Number of successful extensions: 1402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)