Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_N11
(310 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P75072|Y042_MYCPN Hypothetical protein MPN042 (B01_orf672) 30 2.3
sp|Q7G9P4|ALDO3_ARATH Aldehyde oxidase 3 (AtAO-3) (AtAO4) 29 3.0
sp|P38734|MUP3_YEAST Low-affinity methionine permease 28 8.6
>sp|P75072|Y042_MYCPN Hypothetical protein MPN042 (B01_orf672)
Length = 672
Score = 29.6 bits (65), Expect = 2.3
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1
Query: 247 FFLTYTHDGTIVISWEPKTCKNLCTSRAAYYFNSQVQRGFVVPHLVDKLS 98
F +TY+ DG +V SW+ ++ Y FN Q Q+ VPH + K++
Sbjct: 581 FKVTYSFDG-VVPSWK---YGHIQVRTPQYSFNKQEQKILFVPHAIQKIA 626
>sp|Q7G9P4|ALDO3_ARATH Aldehyde oxidase 3 (AtAO-3) (AtAO4)
Length = 1332
Score = 29.3 bits (64), Expect = 3.0
Identities = 11/46 (23%), Positives = 26/46 (56%)
Frame = -1
Query: 211 ISWEPKTCKNLCTSRAAYYFNSQVQRGFVVPHLVDKLSFTLVLVIE 74
+S++ K CK C SR A +VQ ++ +++ ++ +L + ++
Sbjct: 895 LSFDVKVCKTNCLSRTAMRAPGEVQGSYIAESIIENVASSLQMDVD 940
>sp|P38734|MUP3_YEAST Low-affinity methionine permease
Length = 546
Score = 27.7 bits (60), Expect = 8.6
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -1
Query: 241 LTYTHDGTIVISWEPKTC 188
+TY HDG IV W K C
Sbjct: 527 ITYLHDGLIVTEWVKKPC 544
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,490,447
Number of Sequences: 369166
Number of extensions: 665658
Number of successful extensions: 1402
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 68,354,980
effective HSP length: 71
effective length of database: 55,238,795
effective search space used: 1712402645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)