Planaria EST Database


DrC_03060

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03060
         (502 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5NGK7|Y829_FRATT  Hypothetical transport protein FTT0829c      31   1.9  
sp|O80366|ARR9_ARATH  Two-component response regulator ARR9 ...    30   3.2  
sp|Q75UR0|TM16E_MOUSE  Transmembrane protein 16E (Gnathodiap...    28   9.3  
sp|P53835|YN19_YEAST  Hypothetical 73.4 kDa protein in ERG24...    28   9.3  
sp|Q8Z8E5|ATKB_SALTI  Potassium-transporting ATPase B chain ...    28   9.3  
sp|Q8ZQW2|ATKB_SALTY  Potassium-transporting ATPase B chain ...    28   9.3  
>sp|Q5NGK7|Y829_FRATT Hypothetical transport protein FTT0829c
          Length = 571

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +1

Query: 16  ISNKVFVLSGISGSLVVTGIKFLMTNKLNIELVKTFG-LCLPIFAFLGG*Q 165
           I  K FVL GISGSL++     ++  +LNI +    G L   +F + GG Q
Sbjct: 30  IKYKTFVLGGISGSLIIG----VIIGQLNITISPDIGSLFFALFIYAGGYQ 76
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 (Response reactor 4)
          Length = 234

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
 Frame = -3

Query: 173 KIFCYPPRNANMGRHNPNVLTSSIFNLFV--------IKNLIPVTTSDPDIPDNTNTLLL 18
           + F  P R A++ +  P+++ + + N  +        ++N +P   +DP+I D+TN  + 
Sbjct: 128 EFFLKPVRLADLNKLKPHMMKTKLKNQKLEEIETTSKVENGVPTAVADPEIKDSTNIEIE 187

Query: 17  IL 12
           IL
Sbjct: 188 IL 189
>sp|Q75UR0|TM16E_MOUSE Transmembrane protein 16E (Gnathodiaphyseal dysplasia 1 protein
           homolog)
          Length = 904

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +3

Query: 312 NFCNDSYTFKENNFEIMR--FVE----YFFY*GHVLKLLVIFCLVVNACF 443
           N+   SY +KE  F ++R  F E    YF + G+  ++L+   LV  ACF
Sbjct: 267 NWARFSYFYKEQPFHLIRNYFGEKIGIYFVFLGYYTEMLLFAALVGLACF 316
>sp|P53835|YN19_YEAST Hypothetical 73.4 kDa protein in ERG24-MET2 intragenic region
          Length = 661

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 321 NDSYTFKENNFEIMRFVEYFFY*GHVLKLLVIFCLVVNACFDI 449
           N +     N  EI+ F       GHVLK+  + C+ V  CF +
Sbjct: 272 NSTGICSSNQSEILAFYSIL---GHVLKIATVVCITVLICFAV 311
>sp|Q8Z8E5|ATKB_SALTI Potassium-transporting ATPase B chain (Potassium-translocating
           ATPase B chain) (ATP phosphohydrolase
           [potassium-transporting] B chain) (Potassium binding and
           translocating subunit B)
          Length = 569

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -3

Query: 161 YPPRNAN--MGRHNPN--VLTSSIFNLFVIKNLIPV 66
           YP  NA   MG H+PN  +L++ IFN  +I  LIP+
Sbjct: 486 YPQLNALNVMGLHSPNSAILSAVIFNALIIIFLIPL 521
>sp|Q8ZQW2|ATKB_SALTY Potassium-transporting ATPase B chain (Potassium-translocating
           ATPase B chain) (ATP phosphohydrolase
           [potassium-transporting] B chain) (Potassium binding and
           translocating subunit B)
          Length = 682

 Score = 28.5 bits (62), Expect = 9.3
 Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = -3

Query: 161 YPPRNAN--MGRHNPN--VLTSSIFNLFVIKNLIPV 66
           YP  NA   MG H+PN  +L++ IFN  +I  LIP+
Sbjct: 599 YPQLNALNVMGLHSPNSAILSAVIFNALIIIFLIPL 634
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,867,489
Number of Sequences: 369166
Number of extensions: 974018
Number of successful extensions: 2458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)