Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_M23
(502 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5NGK7|Y829_FRATT Hypothetical transport protein FTT0829c 31 1.9
sp|O80366|ARR9_ARATH Two-component response regulator ARR9 ... 30 3.2
sp|Q75UR0|TM16E_MOUSE Transmembrane protein 16E (Gnathodiap... 28 9.3
sp|P53835|YN19_YEAST Hypothetical 73.4 kDa protein in ERG24... 28 9.3
sp|Q8Z8E5|ATKB_SALTI Potassium-transporting ATPase B chain ... 28 9.3
sp|Q8ZQW2|ATKB_SALTY Potassium-transporting ATPase B chain ... 28 9.3
>sp|Q5NGK7|Y829_FRATT Hypothetical transport protein FTT0829c
Length = 571
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +1
Query: 16 ISNKVFVLSGISGSLVVTGIKFLMTNKLNIELVKTFG-LCLPIFAFLGG*Q 165
I K FVL GISGSL++ ++ +LNI + G L +F + GG Q
Sbjct: 30 IKYKTFVLGGISGSLIIG----VIIGQLNITISPDIGSLFFALFIYAGGYQ 76
>sp|O80366|ARR9_ARATH Two-component response regulator ARR9 (Response reactor 4)
Length = 234
Score = 30.0 bits (66), Expect = 3.2
Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 8/62 (12%)
Frame = -3
Query: 173 KIFCYPPRNANMGRHNPNVLTSSIFNLFV--------IKNLIPVTTSDPDIPDNTNTLLL 18
+ F P R A++ + P+++ + + N + ++N +P +DP+I D+TN +
Sbjct: 128 EFFLKPVRLADLNKLKPHMMKTKLKNQKLEEIETTSKVENGVPTAVADPEIKDSTNIEIE 187
Query: 17 IL 12
IL
Sbjct: 188 IL 189
>sp|Q75UR0|TM16E_MOUSE Transmembrane protein 16E (Gnathodiaphyseal dysplasia 1 protein
homolog)
Length = 904
Score = 28.5 bits (62), Expect = 9.3
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +3
Query: 312 NFCNDSYTFKENNFEIMR--FVE----YFFY*GHVLKLLVIFCLVVNACF 443
N+ SY +KE F ++R F E YF + G+ ++L+ LV ACF
Sbjct: 267 NWARFSYFYKEQPFHLIRNYFGEKIGIYFVFLGYYTEMLLFAALVGLACF 316
>sp|P53835|YN19_YEAST Hypothetical 73.4 kDa protein in ERG24-MET2 intragenic region
Length = 661
Score = 28.5 bits (62), Expect = 9.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 321 NDSYTFKENNFEIMRFVEYFFY*GHVLKLLVIFCLVVNACFDI 449
N + N EI+ F GHVLK+ + C+ V CF +
Sbjct: 272 NSTGICSSNQSEILAFYSIL---GHVLKIATVVCITVLICFAV 311
>sp|Q8Z8E5|ATKB_SALTI Potassium-transporting ATPase B chain (Potassium-translocating
ATPase B chain) (ATP phosphohydrolase
[potassium-transporting] B chain) (Potassium binding and
translocating subunit B)
Length = 569
Score = 28.5 bits (62), Expect = 9.3
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -3
Query: 161 YPPRNAN--MGRHNPN--VLTSSIFNLFVIKNLIPV 66
YP NA MG H+PN +L++ IFN +I LIP+
Sbjct: 486 YPQLNALNVMGLHSPNSAILSAVIFNALIIIFLIPL 521
>sp|Q8ZQW2|ATKB_SALTY Potassium-transporting ATPase B chain (Potassium-translocating
ATPase B chain) (ATP phosphohydrolase
[potassium-transporting] B chain) (Potassium binding and
translocating subunit B)
Length = 682
Score = 28.5 bits (62), Expect = 9.3
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
Frame = -3
Query: 161 YPPRNAN--MGRHNPN--VLTSSIFNLFVIKNLIPV 66
YP NA MG H+PN +L++ IFN +I LIP+
Sbjct: 599 YPQLNALNVMGLHSPNSAILSAVIFNALIIIFLIPL 634
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,867,489
Number of Sequences: 369166
Number of extensions: 974018
Number of successful extensions: 2458
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2456
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3168768640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)