Planaria EST Database


DrC_03046

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03046
         (163 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K9N8|LOLC_BUCAP  Lipoprotein releasing system transmemb...    30   2.3  
sp|P55905|A41_LEIDO  Putative ubiquinone biosynthesis methyl...    28   6.6  
sp|Q9ZL98|Y745_HELPJ  Hypothetical RNA pseudouridine synthas...    28   8.6  
>sp|Q8K9N8|LOLC_BUCAP Lipoprotein releasing system transmembrane protein lolC
          Length = 399

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 30  TFTIKEKSNNFRPYRIIGFTRVKFFIIKF*YGRTVSFLSNGFNS 161
           T  + +K NN   ++  G +R K  +I    G T+S + N F +
Sbjct: 287 TMNVLDKKNNISIFQSQGLSRYKIMLIFIILGSTISIVGNSFGT 330
>sp|P55905|A41_LEIDO Putative ubiquinone biosynthesis methyltransferase A41
           (Amastigote-specific protein A41)
          Length = 288

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 31  HLQLKKSPTIFAPTELSDLPALNSS 105
           H  +K +PT   PT  SD+PA N+S
Sbjct: 251 HTGVKTTPTPITPTTSSDIPAQNTS 275
>sp|Q9ZL98|Y745_HELPJ Hypothetical RNA pseudouridine synthase JHP0682 (RNA-uridine
           isomerase) (RNA pseudouridylate synthase)
          Length = 327

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 19  SKKPHLQLKKSPTIFAPTELSDLPALNSSLSNSDMDEQ-SVFYRTD 153
           +K P+L + K+P++  PT +  L + N  LSN  + E+  + +R D
Sbjct: 91  NKPPNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKERYGIVHRLD 136
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.314    0.130    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,787,815
Number of Sequences: 369166
Number of extensions: 222908
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 68,354,980
effective HSP length: 26
effective length of database: 63,551,870
effective search space used: 1715900490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)