Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_K07
(163 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8K9N8|LOLC_BUCAP Lipoprotein releasing system transmemb... 30 2.3
sp|P55905|A41_LEIDO Putative ubiquinone biosynthesis methyl... 28 6.6
sp|Q9ZL98|Y745_HELPJ Hypothetical RNA pseudouridine synthas... 28 8.6
>sp|Q8K9N8|LOLC_BUCAP Lipoprotein releasing system transmembrane protein lolC
Length = 399
Score = 29.6 bits (65), Expect = 2.3
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +3
Query: 30 TFTIKEKSNNFRPYRIIGFTRVKFFIIKF*YGRTVSFLSNGFNS 161
T + +K NN ++ G +R K +I G T+S + N F +
Sbjct: 287 TMNVLDKKNNISIFQSQGLSRYKIMLIFIILGSTISIVGNSFGT 330
>sp|P55905|A41_LEIDO Putative ubiquinone biosynthesis methyltransferase A41
(Amastigote-specific protein A41)
Length = 288
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 31 HLQLKKSPTIFAPTELSDLPALNSS 105
H +K +PT PT SD+PA N+S
Sbjct: 251 HTGVKTTPTPITPTTSSDIPAQNTS 275
>sp|Q9ZL98|Y745_HELPJ Hypothetical RNA pseudouridine synthase JHP0682 (RNA-uridine
isomerase) (RNA pseudouridylate synthase)
Length = 327
Score = 27.7 bits (60), Expect = 8.6
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 19 SKKPHLQLKKSPTIFAPTELSDLPALNSSLSNSDMDEQ-SVFYRTD 153
+K P+L + K+P++ PT + L + N LSN + E+ + +R D
Sbjct: 91 NKPPNLVVHKAPSVKEPTLVDWLKSQNYELSNLGLKERYGIVHRLD 136
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.314 0.130 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,787,815
Number of Sequences: 369166
Number of extensions: 222908
Number of successful extensions: 503
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 68,354,980
effective HSP length: 26
effective length of database: 63,551,870
effective search space used: 1715900490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)