Planaria EST Database


DrC_03043

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03043
         (403 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46568|SRG10_CAEEL  Serpentine receptor class gamma-10 (P...    31   0.80 
sp|Q8CCG1|CN140_MOUSE  Protein C14orf140 homolog                   31   1.0  
sp|Q6AYP4|CN140_RAT  Protein C14orf140 homolog                     31   1.0  
sp|Q8R2V3|ZN445_MOUSE  Zinc finger protein 445                     30   2.3  
sp|P03072|TALA_POVJC  Large T antigen                              29   3.0  
sp|O35493|CLK4_MOUSE  Dual specificity protein kinase CLK4 (...    29   4.0  
sp|O35806|LTBP2_RAT  Latent transforming growth factor-beta-...    28   5.2  
sp|Q9HAZ1|CLK4_HUMAN  Dual specificity protein kinase CLK4 (...    28   5.2  
sp|P90520|TOP2M_DICDI  DNA topoisomerase II, mitochondrial p...    28   6.8  
sp|Q09965|YS96_CAEEL  Putative G-protein coupled receptor B0...    28   8.8  
>sp|P46568|SRG10_CAEEL Serpentine receptor class gamma-10 (Protein srg-10)
          Length = 324

 Score = 31.2 bits (69), Expect = 0.80
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = -1

Query: 214 IRFRSIASYRIFFTSYQMFIKRIFLEMSQTVFALLHIFS 98
           + F SI  Y +FF +Y   I+ + L++   VF  L++FS
Sbjct: 253 VTFASIQIYFVFFAAYTPKIRSVLLQIVSFVFDSLYVFS 291
>sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog
          Length = 527

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 74  IPSVSMDSRENMQQCKYCLRHFQKDSFDKHLIRCK 178
           +PS+      +  QC +C RHF     ++H+ +CK
Sbjct: 479 LPSILPADNPDYVQCPHCSRHFAPKVAERHIPKCK 513
>sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog
          Length = 525

 Score = 30.8 bits (68), Expect = 1.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 74  IPSVSMDSRENMQQCKYCLRHFQKDSFDKHLIRCK 178
           +PS+      +  QC +C RHF     ++H+ +CK
Sbjct: 477 LPSILPAENPDYVQCPHCSRHFAPKVAERHIPKCK 511
>sp|Q8R2V3|ZN445_MOUSE Zinc finger protein 445
          Length = 986

 Score = 29.6 bits (65), Expect = 2.3
 Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
 Frame = +2

Query: 8   YTIHSK--------KPEEYAMASNNGLKIVIPSVSMDSRENMQQCKYCLRHFQKDSF--- 154
           Y IH K        KPE   +  + G    IP  S ++ E   +CKYC + F   SF   
Sbjct: 677 YIIHMKRTQHAIKIKPEHGCLTFSQGAVFPIPRGSHNT-EGSNKCKYCGKAFHNRSFLLI 735

Query: 155 -DKHLIRCKEYSIR----SYRSKPNEAQIEAKRRLSLRLYYK 265
            ++   R K Y  R    ++R   N  + + K  L  R  Y+
Sbjct: 736 HERVHTREKPYQCRECEKAFRWSSNLYRHQRKHFLHKRYKYR 777
>sp|P03072|TALA_POVJC Large T antigen
          Length = 688

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 35  EYAMASNNGLKIVIPSVSMDSRENMQQCKYCLRHFQKDSFDKH 163
           +YA+ +      ++  + +D +EN QQCK C +  Q + F+ H
Sbjct: 276 QYALETKCEDVFLLMGMYLDFQENPQQCKKCEKKDQPNHFNHH 318
>sp|O35493|CLK4_MOUSE Dual specificity protein kinase CLK4 (CDC-like kinase 4)
          Length = 481

 Score = 28.9 bits (63), Expect = 4.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 122 YCLRHFQKDSFDKHLIRCKEYSIRSYRSKP 211
           Y  RH+ +D    + I C + S+RS RS P
Sbjct: 84  YVPRHYHRDVESTYRIHCSKSSVRSRRSSP 113
>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
            (LTBP-2)
          Length = 1764

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 17/60 (28%), Positives = 28/60 (46%)
 Frame = +2

Query: 146  DSFDKHLIRCKEYSIRSYRSKPNEAQIEAKRRLSLRLYYKPKAFRGDSPDDLSTTVSSND 325
            +++ +    C   S   Y    N A+IEA+R   +  +++P    G  PDDL  T+   D
Sbjct: 1561 EAWSQQCALCPPRSSEVYAQLCNVARIEAEREAGI--HFRPGYEYGPGPDDLPETLYGPD 1618
>sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 (CDC-like kinase 4)
          Length = 481

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 122 YCLRHFQKDSFDKHLIRCKEYSIRSYRSKP 211
           Y  RH+ +D    + I C + S+RS RS P
Sbjct: 84  YVPRHYHRDIESGYRIHCSKSSVRSRRSSP 113
>sp|P90520|TOP2M_DICDI DNA topoisomerase II, mitochondrial precursor
          Length = 1282

 Score = 28.1 bits (61), Expect = 6.8
 Identities = 19/92 (20%), Positives = 36/92 (39%)
 Frame = +2

Query: 62  LKIVIPSVSMDSRENMQQCKYCLRHFQKDSFDKHLIRCKEYSIRSYRSKPNEAQIEAKRR 241
           ++ V P +        ++  + ++ ++K        + K+Y+I+ Y+        EAK  
Sbjct: 675 VEFVTPIIKATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEY 734

Query: 242 LSLRLYYKPKAFRGDSPDDLSTTVSSNDFDCL 337
            S    +  K   GD  DDL     + D   L
Sbjct: 735 FSNLDKHVIKFIWGDEADDLIKMAFAKDLSSL 766
>sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6
          Length = 982

 Score = 27.7 bits (60), Expect = 8.8
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
 Frame = -3

Query: 224 FVLH*VSIYSFV*NILYIVSNVYQKNLFGNVSNSICIVAYFL--VNPSKHSELLFSIHYL 51
           F LH +S+ SF+     I + +   NLF N +N   I  YFL   N S+  EL+     +
Sbjct: 583 FNLHLLSLLSFL-----ISNQMSTTNLFSNCTNHYPIEQYFLNCTNTSRPCELIHDFAVV 637

Query: 50  KPLHILL 30
             L  +L
Sbjct: 638 AELLTIL 644
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,300,811
Number of Sequences: 369166
Number of extensions: 792357
Number of successful extensions: 2291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)