Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_J21
(403 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46568|SRG10_CAEEL Serpentine receptor class gamma-10 (P... 31 0.80
sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog 31 1.0
sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog 31 1.0
sp|Q8R2V3|ZN445_MOUSE Zinc finger protein 445 30 2.3
sp|P03072|TALA_POVJC Large T antigen 29 3.0
sp|O35493|CLK4_MOUSE Dual specificity protein kinase CLK4 (... 29 4.0
sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-... 28 5.2
sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 (... 28 5.2
sp|P90520|TOP2M_DICDI DNA topoisomerase II, mitochondrial p... 28 6.8
sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0... 28 8.8
>sp|P46568|SRG10_CAEEL Serpentine receptor class gamma-10 (Protein srg-10)
Length = 324
Score = 31.2 bits (69), Expect = 0.80
Identities = 14/39 (35%), Positives = 23/39 (58%)
Frame = -1
Query: 214 IRFRSIASYRIFFTSYQMFIKRIFLEMSQTVFALLHIFS 98
+ F SI Y +FF +Y I+ + L++ VF L++FS
Sbjct: 253 VTFASIQIYFVFFAAYTPKIRSVLLQIVSFVFDSLYVFS 291
>sp|Q8CCG1|CN140_MOUSE Protein C14orf140 homolog
Length = 527
Score = 30.8 bits (68), Expect = 1.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 74 IPSVSMDSRENMQQCKYCLRHFQKDSFDKHLIRCK 178
+PS+ + QC +C RHF ++H+ +CK
Sbjct: 479 LPSILPADNPDYVQCPHCSRHFAPKVAERHIPKCK 513
>sp|Q6AYP4|CN140_RAT Protein C14orf140 homolog
Length = 525
Score = 30.8 bits (68), Expect = 1.0
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 74 IPSVSMDSRENMQQCKYCLRHFQKDSFDKHLIRCK 178
+PS+ + QC +C RHF ++H+ +CK
Sbjct: 477 LPSILPAENPDYVQCPHCSRHFAPKVAERHIPKCK 511
>sp|Q8R2V3|ZN445_MOUSE Zinc finger protein 445
Length = 986
Score = 29.6 bits (65), Expect = 2.3
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 16/102 (15%)
Frame = +2
Query: 8 YTIHSK--------KPEEYAMASNNGLKIVIPSVSMDSRENMQQCKYCLRHFQKDSF--- 154
Y IH K KPE + + G IP S ++ E +CKYC + F SF
Sbjct: 677 YIIHMKRTQHAIKIKPEHGCLTFSQGAVFPIPRGSHNT-EGSNKCKYCGKAFHNRSFLLI 735
Query: 155 -DKHLIRCKEYSIR----SYRSKPNEAQIEAKRRLSLRLYYK 265
++ R K Y R ++R N + + K L R Y+
Sbjct: 736 HERVHTREKPYQCRECEKAFRWSSNLYRHQRKHFLHKRYKYR 777
>sp|P03072|TALA_POVJC Large T antigen
Length = 688
Score = 29.3 bits (64), Expect = 3.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 35 EYAMASNNGLKIVIPSVSMDSRENMQQCKYCLRHFQKDSFDKH 163
+YA+ + ++ + +D +EN QQCK C + Q + F+ H
Sbjct: 276 QYALETKCEDVFLLMGMYLDFQENPQQCKKCEKKDQPNHFNHH 318
>sp|O35493|CLK4_MOUSE Dual specificity protein kinase CLK4 (CDC-like kinase 4)
Length = 481
Score = 28.9 bits (63), Expect = 4.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 122 YCLRHFQKDSFDKHLIRCKEYSIRSYRSKP 211
Y RH+ +D + I C + S+RS RS P
Sbjct: 84 YVPRHYHRDVESTYRIHCSKSSVRSRRSSP 113
>sp|O35806|LTBP2_RAT Latent transforming growth factor-beta-binding protein 2 precursor
(LTBP-2)
Length = 1764
Score = 28.5 bits (62), Expect = 5.2
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +2
Query: 146 DSFDKHLIRCKEYSIRSYRSKPNEAQIEAKRRLSLRLYYKPKAFRGDSPDDLSTTVSSND 325
+++ + C S Y N A+IEA+R + +++P G PDDL T+ D
Sbjct: 1561 EAWSQQCALCPPRSSEVYAQLCNVARIEAEREAGI--HFRPGYEYGPGPDDLPETLYGPD 1618
>sp|Q9HAZ1|CLK4_HUMAN Dual specificity protein kinase CLK4 (CDC-like kinase 4)
Length = 481
Score = 28.5 bits (62), Expect = 5.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 122 YCLRHFQKDSFDKHLIRCKEYSIRSYRSKP 211
Y RH+ +D + I C + S+RS RS P
Sbjct: 84 YVPRHYHRDIESGYRIHCSKSSVRSRRSSP 113
>sp|P90520|TOP2M_DICDI DNA topoisomerase II, mitochondrial precursor
Length = 1282
Score = 28.1 bits (61), Expect = 6.8
Identities = 19/92 (20%), Positives = 36/92 (39%)
Frame = +2
Query: 62 LKIVIPSVSMDSRENMQQCKYCLRHFQKDSFDKHLIRCKEYSIRSYRSKPNEAQIEAKRR 241
++ V P + ++ + ++ ++K + K+Y+I+ Y+ EAK
Sbjct: 675 VEFVTPIIKATKSSTQKKSFFTIKDYEKWRETISSDQLKQYTIKYYKGLGTSTSAEAKEY 734
Query: 242 LSLRLYYKPKAFRGDSPDDLSTTVSSNDFDCL 337
S + K GD DDL + D L
Sbjct: 735 FSNLDKHVIKFIWGDEADDLIKMAFAKDLSSL 766
>sp|Q09965|YS96_CAEEL Putative G-protein coupled receptor B0244.6
Length = 982
Score = 27.7 bits (60), Expect = 8.8
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -3
Query: 224 FVLH*VSIYSFV*NILYIVSNVYQKNLFGNVSNSICIVAYFL--VNPSKHSELLFSIHYL 51
F LH +S+ SF+ I + + NLF N +N I YFL N S+ EL+ +
Sbjct: 583 FNLHLLSLLSFL-----ISNQMSTTNLFSNCTNHYPIEQYFLNCTNTSRPCELIHDFAVV 637
Query: 50 KPLHILL 30
L +L
Sbjct: 638 AELLTIL 644
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,300,811
Number of Sequences: 369166
Number of extensions: 792357
Number of successful extensions: 2291
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2290
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1758783250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)