Planaria EST Database


DrC_03032

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03032
         (562 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q13568|IRF5_HUMAN  Interferon regulatory factor 5 (IRF-5)       56   7e-08
sp|P56477|IRF5_MOUSE  Interferon regulatory factor 5 (IRF-5)       54   3e-07
sp|P97431|IRF6_MOUSE  Interferon regulatory factor 6 (IRF-6)       49   1e-05
sp|O14896|IRF6_HUMAN  Interferon regulatory factor 6 (IRF-6)       48   2e-05
sp|P70434|IRF7_MOUSE  Interferon regulatory factor 7 (IRF-7)       45   1e-04
sp|Q15306|IRF4_HUMAN  Interferon regulatory factor 4 (IRF-4)...    43   5e-04
sp|Q02556|IRF8_HUMAN  Interferon regulatory factor 8 (IRF-8)...    42   0.001
sp|Q64287|IRF4_MOUSE  Interferon regulatory factor 4 (IRF-4)...    42   0.001
sp|P23611|IRF8_MOUSE  Interferon regulatory factor 8 (IRF-8)...    40   0.003
sp|Q90871|IRF8_CHICK  Interferon regulatory factor 8 (IRF-8)...    40   0.005
>sp|Q13568|IRF5_HUMAN Interferon regulatory factor 5 (IRF-5)
          Length = 498

 Score = 55.8 bits (133), Expect = 7e-08
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 5/143 (3%)
 Frame = +2

Query: 17  ENLSTAGPEPIE----PQIYQYVSDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCA 184
           E +   GP  +E    P      SD  ++  + LL+ + RG +L +    +YA +LC+C 
Sbjct: 284 EQVELFGPISLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCK 343

Query: 185 TFVYRPGNNGEFYFVDKLNRRDKMMIFDFRSFLEELHYFQRGLGN-KPHVELILAFGQQI 361
            F   P  +      + + R  K  +F    FL EL  FQ+G  N  P  E+   FG++ 
Sbjct: 344 VFWSGPCASAHDSCPNPIQREVKTKLFSLEHFLNELILFQKGQTNTPPPFEIFFCFGEEW 403

Query: 362 KDNSSPESLYVWCRLASCKAWFL 430
            D    E   +  ++    A  L
Sbjct: 404 PDRKpreKKLITVQVVPVAARLL 426
>sp|P56477|IRF5_MOUSE Interferon regulatory factor 5 (IRF-5)
          Length = 497

 Score = 53.9 bits (128), Expect = 3e-07
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
 Frame = +2

Query: 17  ENLSTAGPEPIE----PQIYQYVSDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCA 184
           E +   GP  +E    P      SD  ++  + LL+ + RG +L +    +YA +LC+C 
Sbjct: 283 EQVELFGPVTLEQVRFPSPEDIPSDKQRFYTNQLLDVLDRGLILQLQGQDLYAIRLCQCK 342

Query: 185 TFVYRPGNNGEFYFVDKLNRRDKMMIFDFRSFLEELHYFQRGLGN-KPHVELILAFGQQI 361
            F   P         + + R  K  +F    FL EL  FQ+G  N  P  E+   FG++ 
Sbjct: 343 VFWSGPCALAHGSCPNPIQREVKTKLFSLEQFLNELILFQKGQTNTPPPFEIFFCFGEEW 402

Query: 362 KD 367
            D
Sbjct: 403 PD 404
>sp|P97431|IRF6_MOUSE Interferon regulatory factor 6 (IRF-6)
          Length = 467

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 38/124 (30%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
 Frame = +2

Query: 17  ENLSTAGPEPIEPQIYQYVSDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVY 196
           E +   GPE I        ++  K     LL+ M RG +L +   +IYA +LC+C   VY
Sbjct: 272 EQVKFPGPEHI-------TNEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCK--VY 322

Query: 197 RPGNNGEFYFVDKL-NRRDKMMIFDFRSFLEELHYFQRG-LGNKPHVELILAFGQQIKDN 370
             G          L  R+ K+ +F   +FL EL   Q+G +  +P  E+ L FG++  D 
Sbjct: 323 WSGPCAPSLAAPNLIERQKKVKLFCLETFLSELIAHQKGQIEKQPPFEIYLCFGEEWPDG 382

Query: 371 SSPE 382
              E
Sbjct: 383 KPLE 386
>sp|O14896|IRF6_HUMAN Interferon regulatory factor 6 (IRF-6)
          Length = 467

 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 37/124 (29%), Positives = 57/124 (45%), Gaps = 2/124 (1%)
 Frame = +2

Query: 17  ENLSTAGPEPIEPQIYQYVSDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVY 196
           E +   GPE I        ++  K     LL+ M RG +L +   +IYA +LC+C   VY
Sbjct: 272 EQVKFPGPEHI-------TNEKQKLFTSKLLDVMDRGLILEVSGHAIYAIRLCQCK--VY 322

Query: 197 RPGNNGEFYFVDKL-NRRDKMMIFDFRSFLEELHYFQRG-LGNKPHVELILAFGQQIKDN 370
             G          L  R+ K+ +F   +FL +L   Q+G +  +P  E+ L FG++  D 
Sbjct: 323 WSGPCAPSLVAPNLIERQKKVKLFCLETFLSDLIAHQKGQIEKQPPFEIYLCFGEEWPDG 382

Query: 371 SSPE 382
              E
Sbjct: 383 KPLE 386
>sp|P70434|IRF7_MOUSE Interferon regulatory factor 7 (IRF-7)
          Length = 457

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
 Frame = +2

Query: 29  TAGPEP-IEPQIYQYVSDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATF--VYR 199
           T+ P+P I P   +       +  + LL+++  G  L +   S++A ++ KC  +  V  
Sbjct: 277 TSEPQPVIFPSPAELPDQKQLHYTETLLQHVSPGLQLELRGPSLWALRMGKCKVYWEVGS 336

Query: 200 P-GNNGEFYFVDKLNRRDKMMIFDFRSFLEELHYFQ-RGLGNKPHVELILAFGQQIKDNS 373
           P G  G       L R     IFDF +F  EL  F+ R     PH  + L FGQ +    
Sbjct: 337 PMGTTGPSTPPQLLERNRHTPIFDFSTFFRELEEFRARRRQGSPHYTIYLGFGQDLSAGR 396

Query: 374 SPESLYVWCRLAS--CKAW 424
             E   +  +L    CKA+
Sbjct: 397 PKEKTLILVKLEPWVCKAY 415
>sp|Q15306|IRF4_HUMAN Interferon regulatory factor 4 (IRF-4) (Lymphocyte-specific
           interferon regulatory factor) (LSIRF) (NF-EM5) (Multiple
           myeloma oncogene 1)
          Length = 451

 Score = 43.1 bits (100), Expect = 5e-04
 Identities = 29/111 (26%), Positives = 55/111 (49%), Gaps = 4/111 (3%)
 Frame = +2

Query: 47  IEPQIYQYVSDSN-KYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVYRP---GNNG 214
           ++  ++ Y  D+  +  ++ LL +++RG VL +    +YA++LC+   +   P    N+ 
Sbjct: 287 LDQVLFPYPEDNGQRKNIEKLLSHLERGVVLWMAPDGLYAKRLCQSRIYWDGPLALCNDR 346

Query: 215 EFYFVDKLNRRDKMMIFDFRSFLEELHYFQRGLGNKPHVELILAFGQQIKD 367
                +KL R     +FD + FL EL  F     + P  ++ L FG++  D
Sbjct: 347 P----NKLERDQTCKLFDTQQFLSELQAFAHHGRSLPRFQVTLCFGEEFPD 393
>sp|Q02556|IRF8_HUMAN Interferon regulatory factor 8 (IRF-8) (Interferon consensus
           sequence binding protein) (ICSBP)
          Length = 426

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 31/119 (26%), Positives = 51/119 (42%), Gaps = 8/119 (6%)
 Frame = +2

Query: 35  GPEPIE----PQIYQYVSDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVYRP 202
           GPE +E    P      S+  +     L  +++RG +L      ++ ++LC+   F    
Sbjct: 243 GPEGLELVRFPPADAIPSERQRQVTRKLFGHLERGVLLHSSRQGVFVKRLCQGRVFC--S 300

Query: 203 GN----NGEFYFVDKLNRRDKMMIFDFRSFLEELHYFQRGLGNKPHVELILAFGQQIKD 367
           GN     G     +KL R + + +FD   F  EL  F    G  P   ++L FG++  D
Sbjct: 301 GNAVVCKGR---PNKLERDEVVQVFDTSQFFRELQQFYNSQGRLPDGRVVLCFGEEFPD 356
>sp|Q64287|IRF4_MOUSE Interferon regulatory factor 4 (IRF-4) (Lymphocyte-specific
           interferon regulatory factor) (LSIRF) (NF-EM5) (PU.1
           interaction partner) (Transcriptional activator PIP)
          Length = 450

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
 Frame = +2

Query: 47  IEPQIYQYVSDSN-KYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVYRPGNNGEFY 223
           ++  ++ Y  D+  +  ++ LL +++RG VL +    +YA++LC+   +      +G   
Sbjct: 287 LDQVLFPYPDDNGQRKNIEKLLSHLERGLVLWMAPDGLYAKRLCQSRIYW-----DGPLA 341

Query: 224 FV----DKLNRRDKMMIFDFRSFLEELHYFQRGLGNKPHVELILAFGQQIKD 367
                 +KL R     +FD + FL EL  F       P  ++ L FG++  D
Sbjct: 342 LCSDRPNKLERDQTCKLFDTQQFLSELQVFAHHGRPAPRFQVTLCFGEEFPD 393
>sp|P23611|IRF8_MOUSE Interferon regulatory factor 8 (IRF-8) (Interferon consensus
           sequence binding protein) (ICSBP)
          Length = 424

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
 Frame = +2

Query: 35  GPEPIEPQIYQYV----SDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVYRP 202
           GP+ +EP  +       S+  +     L  +++RG +L      ++ ++LC+   F    
Sbjct: 241 GPDGLEPVCFPTADTIPSERQRQVTRKLFGHLERGVLLHSNRKGVFVKRLCQGRVFC--S 298

Query: 203 GN----NGEFYFVDKLNRRDKMMIFDFRSFLEELHYFQRGLGNKPHVELILAFGQQIKD 367
           GN     G     +KL R + + +FD   F+ EL  F       P   ++L FG++  D
Sbjct: 299 GNAVVCKGR---PNKLERDEVVQVFDTNQFIRELQQFYATQSRLPDSRVVLCFGEEFPD 354
>sp|Q90871|IRF8_CHICK Interferon regulatory factor 8 (IRF-8) (Interferon consensus
           sequence binding protein) (ICSBP)
          Length = 425

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 1/99 (1%)
 Frame = +2

Query: 74  SDSNKYCVDMLLENMQRGGVLTILNGSIYAEKLCKCATFVYRPGNNGEFYF-VDKLNRRD 250
           +D  K     L  +++RG +L      I+ ++LC+    V+  GN   +     KL+R +
Sbjct: 262 NDRQKQITKKLFGHLERGVLLHSNKQGIFIKRLCQGR--VFWSGNTVVYKDRPSKLDRDE 319

Query: 251 KMMIFDFRSFLEELHYFQRGLGNKPHVELILAFGQQIKD 367
            + IFD   F  EL  +    G  P   ++L FG++  D
Sbjct: 320 VVKIFDTNLFFRELQQYYNNQGRFPDSRVMLCFGEEFPD 358
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,852,392
Number of Sequences: 369166
Number of extensions: 1294408
Number of successful extensions: 3154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3149
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 4029688280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)