Planaria EST Database


DrC_03026

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03026
         (633 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35978|KINH_STRPU  Kinesin heavy chain                          39   0.008
sp|P25805|CYSP_PLAFA  Trophozoite cysteine proteinase precur...    39   0.011
sp|P61430|Y1275_ARATH  Hypothetical protein At1g22275              39   0.014
sp|O33600|RAD50_SULAC  DNA double-strand break repair rad50 ...    38   0.019
sp|O66834|RECN_AQUAE  DNA repair protein recN (Recombination...    37   0.032
sp|P16568|BICD_DROME  Cytoskeleton-like bicaudal D protein         37   0.042
sp|P75260|Y138_MYCPN  Hypothetical UPF0134 protein MPN138 (E...    37   0.042
sp|Q59037|SMC_METJA  Chromosome partition protein smc homolog      37   0.042
sp|Q9NG56|TPM_BLAGE  Tropomyosin                                   37   0.055
sp|Q9LME2|Y1226_ARATH  Hypothetical protein At1g22260              36   0.072
>sp|P35978|KINH_STRPU Kinesin heavy chain
          Length = 1031

 Score = 39.3 bits (90), Expect = 0.008
 Identities = 31/117 (26%), Positives = 52/117 (44%)
 Frame = +2

Query: 8   IDEIFKYLSL*IEIDKLNKKLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICG 187
           +DE F    L   + K+  +++ M  +  I+  +N E E     S  E    R+ +    
Sbjct: 573 VDEEFTMARL--FVSKMKTEVKTMSQRCKILEASNAENETKIRTSEDELDSCRMTIQQHE 630

Query: 188 DNLFVFQKEFEELERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLDGERDKV 358
             +    +   E E K       +D+LNEEIVKLR  +++   D +  K + E DK+
Sbjct: 631 AKMKSLSENIRETEGKKRHLEDSLDMLNEEIVKLRAAEEIRLTDQEDKKRE-EEDKM 686
>sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precursor (TCP)
          Length = 569

 Score = 38.9 bits (89), Expect = 0.011
 Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
 Frame = +2

Query: 5   NIDEIFKYLSL*IEIDKLNKKLQEMESKFGIVGKTNIEK---EFNKLKSSLERKEVRLNV 175
           N  E+   L   +EI+KL  + ++ + K  ++     EK   E    +    +KE  +N 
Sbjct: 159 NRKELSNILHKLLEINKLILREEKDDKKVYLINDNYDEKGALEIGMNEEMKYKKEDPINN 218

Query: 176 DICGDNLFVFQKEFEELERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLD 340
                  F F KE  ++ +  DEQ RK ++     + ++N +KL +  + K K++
Sbjct: 219 IKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVN 273
>sp|P61430|Y1275_ARATH Hypothetical protein At1g22275
          Length = 856

 Score = 38.5 bits (88), Expect = 0.014
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
 Frame = +2

Query: 47  IDKLNKKLQEMESKFGIVGK--TNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKE-- 214
           I+ LN+++++M  +     +  T+ +KE  +LK   + KE+    + CG    + +K+  
Sbjct: 153 INSLNQQMRDMSLRLDAAKEEITSRDKELEELKLEKQHKEMFYQTERCGTASLIEKKDAV 212

Query: 215 FEELERKCDEQTRKIDLLNEEIVKLRNVDKLMRED 319
             ELE    E+  KI+ LN ++ KL +++   +ED
Sbjct: 213 ITELETTAAERKLKIEKLNSQLEKL-HLELTTKED 246
>sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ATPase
          Length = 886

 Score = 38.1 bits (87), Expect = 0.019
 Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
 Frame = +2

Query: 44  EIDKLNKKLQEMESKFGIVGKTNIEKE--FNKLKSSLER-KEVRLNVDICGDNLFVFQKE 214
           EID+L K+++E++ K   + +   EKE   N+  +   R KE+++  DI    L V  K+
Sbjct: 197 EIDRLKKEIEEIKVKLENIEREAKEKEDELNQYNTEFNRIKEIKVQYDILSGELSVVNKK 256

Query: 215 FEELERKCDEQTRKIDLLNEEIVKLRNVDK 304
            EE+  +  +   K    N+   +++ +D+
Sbjct: 257 IEEIALRLKDFEEKEKRYNKIETEVKELDE 286
>sp|O66834|RECN_AQUAE DNA repair protein recN (Recombination protein N)
          Length = 520

 Score = 37.4 bits (85), Expect = 0.032
 Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
 Frame = +2

Query: 44  EIDKLNKKLQEMESKFG--IVGKTNIEKEFNKLKSSLERKEVRLN---VDICGDNLFVFQ 208
           EI K   K++    KF   I    N+E+E  +L +SL+ +   ++   V+   + LF  Q
Sbjct: 223 EIRKNLAKVESYSGKFSELIEKIANLEEEVYELYNSLKEEMPEISEEEVNEINEKLFRIQ 282

Query: 209 KEFEELERKCDEQTRKIDLLNEEIVKLRNVD----------KLMREDLDKLKLDGERDK 355
           +  E+ ++   E  ++++ + EE+  L +VD          + +RE+ DKL  +  RD+
Sbjct: 283 RLEEKYKKSFPEILKEVEEIKEELSNLNSVDFKEEELREEVEKLREEYDKLAEEVSRDR 341
>sp|P16568|BICD_DROME Cytoskeleton-like bicaudal D protein
          Length = 782

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
 Frame = +2

Query: 44  EIDKLNKKLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKEFEE 223
           E D+L  K +  + KF    +T +  E+    S LE + + L   +   +L   Q EFE 
Sbjct: 153 EADRLRLKSELKDLKFR---ETRMLSEY----SELEEENISLQKQV--SSLRSSQVEFEG 203

Query: 224 LERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKL--KLDGERD 352
            + +    T +++LLN+++ +L N+ K+  + +++    L GER+
Sbjct: 204 AKHEIRRLTEEVELLNQQVDELANLKKIAEKQMEEALETLQGERE 248
>sp|P75260|Y138_MYCPN Hypothetical UPF0134 protein MPN138 (E07_orf166)
          Length = 166

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
 Frame = +2

Query: 53  KLNKKLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKEFEELER 232
           KLNK +  + +++         KEFN+ K S +++  ++   +  D L V   + ++LE 
Sbjct: 49  KLNKPVIPVNTEYVT------RKEFNEYKDSNDQRLTKIENKV--DKLEV---KVDKLEE 97

Query: 233 KCDEQTRKIDLLNEEIVKLR-NVDKLMREDLDKLK 334
           K D+   K+D L E++ KL   VDKL  E +DKL+
Sbjct: 98  KVDKLEAKVDKLEEKVDKLEAKVDKL-EEKVDKLE 131
>sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
          Length = 1169

 Score = 37.0 bits (84), Expect = 0.042
 Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
 Frame = +2

Query: 44   EIDKLNKKLQEMESKFGIVGKT------NIEKEFNKLKSSLER-KEVRLNVDICGDNLFV 202
            +I++LNKK+ E+ +K  I+ K       +IEK  + L+   +R +E+  N+    +    
Sbjct: 837  KIEELNKKVSELINKKVILEKNISFYKESIEKNLSILEEKRKRYEELAKNLKELTEKKEQ 896

Query: 203  FQKEFEELERKCDEQTRKI----DLLNEEIVKLRNVDKLMREDLDKLKL 337
             +KE E LER+  E  RK+    + +NE +V+    +  + E+  KL L
Sbjct: 897  LEKEIETLERERREILRKVRDIENRINELMVEKAKYESKLEEEERKLYL 945

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
 Frame = +2

Query: 11  DEIFKYLSL*IEIDKLNKKLQEMESKFGIVGKTNIEKEFN-----KLKSSLER------K 157
           DEI K  +   E+ +L K+L ++++   ++ + N E E N     KLK  LE       K
Sbjct: 398 DEIAKNQN---ELYRLKKELNDLDN---LINRKNFEIEKNNEMIKKLKEELETVEDVDTK 451

Query: 158 EVRLNVDICGDNLFVFQKEFEELERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKL 337
            + L ++     +   ++  +ELE K  E   K+D L+ E VK     K ++E +++L +
Sbjct: 452 PLYLELENLNVEIEFSKRGIKELEEKKKELQAKLDELHAEYVKENARIKALKE-MEELSM 510

Query: 338 D 340
           D
Sbjct: 511 D 511
>sp|Q9NG56|TPM_BLAGE Tropomyosin
          Length = 284

 Score = 36.6 bits (83), Expect = 0.055
 Identities = 21/87 (24%), Positives = 42/87 (48%)
 Frame = +2

Query: 65  KLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKEFEELERKCDE 244
           K+ E+E +  +VG      E ++ K++L  +E +  +      L   +   E  ER   +
Sbjct: 189 KIVELEEELRVVGNNLKSLEVSEEKANLREEEYKQQIKTLNTRLKEAEARAEFAERSVQK 248

Query: 245 QTRKIDLLNEEIVKLRNVDKLMREDLD 325
             +++D L +E+V  +   K + +DLD
Sbjct: 249 LQKEVDRLEDELVHEKEKYKYICDDLD 275
>sp|Q9LME2|Y1226_ARATH Hypothetical protein At1g22260
          Length = 871

 Score = 36.2 bits (82), Expect = 0.072
 Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
 Frame = +2

Query: 47  IDKLNKKLQEMESKFGIVGK--TNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKE-- 214
           ID LN+++++M  +     +  T+ +KE  +LK   ++KE+    + CG    + +K+  
Sbjct: 153 IDSLNQQMRDMSLRLDAAKEEITSRDKELEELKLEKQQKEMFYQTERCGTASLIEKKDAV 212

Query: 215 FEELERKCDEQTRKIDLLNEEIVKLRNVDKLMRED 319
             +LE    E+   I+ LN ++ K+ +++   +ED
Sbjct: 213 ITKLEASAAERKLNIENLNSQLEKV-HLELTTKED 246
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,461,313
Number of Sequences: 369166
Number of extensions: 1032301
Number of successful extensions: 4306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4281
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)