Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_G02
(633 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P35978|KINH_STRPU Kinesin heavy chain 39 0.008
sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precur... 39 0.011
sp|P61430|Y1275_ARATH Hypothetical protein At1g22275 39 0.014
sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ... 38 0.019
sp|O66834|RECN_AQUAE DNA repair protein recN (Recombination... 37 0.032
sp|P16568|BICD_DROME Cytoskeleton-like bicaudal D protein 37 0.042
sp|P75260|Y138_MYCPN Hypothetical UPF0134 protein MPN138 (E... 37 0.042
sp|Q59037|SMC_METJA Chromosome partition protein smc homolog 37 0.042
sp|Q9NG56|TPM_BLAGE Tropomyosin 37 0.055
sp|Q9LME2|Y1226_ARATH Hypothetical protein At1g22260 36 0.072
>sp|P35978|KINH_STRPU Kinesin heavy chain
Length = 1031
Score = 39.3 bits (90), Expect = 0.008
Identities = 31/117 (26%), Positives = 52/117 (44%)
Frame = +2
Query: 8 IDEIFKYLSL*IEIDKLNKKLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICG 187
+DE F L + K+ +++ M + I+ +N E E S E R+ +
Sbjct: 573 VDEEFTMARL--FVSKMKTEVKTMSQRCKILEASNAENETKIRTSEDELDSCRMTIQQHE 630
Query: 188 DNLFVFQKEFEELERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLDGERDKV 358
+ + E E K +D+LNEEIVKLR +++ D + K + E DK+
Sbjct: 631 AKMKSLSENIRETEGKKRHLEDSLDMLNEEIVKLRAAEEIRLTDQEDKKRE-EEDKM 686
>sp|P25805|CYSP_PLAFA Trophozoite cysteine proteinase precursor (TCP)
Length = 569
Score = 38.9 bits (89), Expect = 0.011
Identities = 28/115 (24%), Positives = 53/115 (46%), Gaps = 3/115 (2%)
Frame = +2
Query: 5 NIDEIFKYLSL*IEIDKLNKKLQEMESKFGIVGKTNIEK---EFNKLKSSLERKEVRLNV 175
N E+ L +EI+KL + ++ + K ++ EK E + +KE +N
Sbjct: 159 NRKELSNILHKLLEINKLILREEKDDKKVYLINDNYDEKGALEIGMNEEMKYKKEDPINN 218
Query: 176 DICGDNLFVFQKEFEELERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKLD 340
F F KE ++ + DEQ RK ++ + ++N +KL + + K K++
Sbjct: 219 IKYASKFFKFMKEHNKVYKNIDEQMRKFEIFKINYISIKNHNKLNKNAMYKKKVN 273
>sp|P61430|Y1275_ARATH Hypothetical protein At1g22275
Length = 856
Score = 38.5 bits (88), Expect = 0.014
Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +2
Query: 47 IDKLNKKLQEMESKFGIVGK--TNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKE-- 214
I+ LN+++++M + + T+ +KE +LK + KE+ + CG + +K+
Sbjct: 153 INSLNQQMRDMSLRLDAAKEEITSRDKELEELKLEKQHKEMFYQTERCGTASLIEKKDAV 212
Query: 215 FEELERKCDEQTRKIDLLNEEIVKLRNVDKLMRED 319
ELE E+ KI+ LN ++ KL +++ +ED
Sbjct: 213 ITELETTAAERKLKIEKLNSQLEKL-HLELTTKED 246
>sp|O33600|RAD50_SULAC DNA double-strand break repair rad50 ATPase
Length = 886
Score = 38.1 bits (87), Expect = 0.019
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 3/90 (3%)
Frame = +2
Query: 44 EIDKLNKKLQEMESKFGIVGKTNIEKE--FNKLKSSLER-KEVRLNVDICGDNLFVFQKE 214
EID+L K+++E++ K + + EKE N+ + R KE+++ DI L V K+
Sbjct: 197 EIDRLKKEIEEIKVKLENIEREAKEKEDELNQYNTEFNRIKEIKVQYDILSGELSVVNKK 256
Query: 215 FEELERKCDEQTRKIDLLNEEIVKLRNVDK 304
EE+ + + K N+ +++ +D+
Sbjct: 257 IEEIALRLKDFEEKEKRYNKIETEVKELDE 286
>sp|O66834|RECN_AQUAE DNA repair protein recN (Recombination protein N)
Length = 520
Score = 37.4 bits (85), Expect = 0.032
Identities = 31/119 (26%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Frame = +2
Query: 44 EIDKLNKKLQEMESKFG--IVGKTNIEKEFNKLKSSLERKEVRLN---VDICGDNLFVFQ 208
EI K K++ KF I N+E+E +L +SL+ + ++ V+ + LF Q
Sbjct: 223 EIRKNLAKVESYSGKFSELIEKIANLEEEVYELYNSLKEEMPEISEEEVNEINEKLFRIQ 282
Query: 209 KEFEELERKCDEQTRKIDLLNEEIVKLRNVD----------KLMREDLDKLKLDGERDK 355
+ E+ ++ E ++++ + EE+ L +VD + +RE+ DKL + RD+
Sbjct: 283 RLEEKYKKSFPEILKEVEEIKEELSNLNSVDFKEEELREEVEKLREEYDKLAEEVSRDR 341
>sp|P16568|BICD_DROME Cytoskeleton-like bicaudal D protein
Length = 782
Score = 37.0 bits (84), Expect = 0.042
Identities = 28/105 (26%), Positives = 54/105 (51%), Gaps = 2/105 (1%)
Frame = +2
Query: 44 EIDKLNKKLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKEFEE 223
E D+L K + + KF +T + E+ S LE + + L + +L Q EFE
Sbjct: 153 EADRLRLKSELKDLKFR---ETRMLSEY----SELEEENISLQKQV--SSLRSSQVEFEG 203
Query: 224 LERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKL--KLDGERD 352
+ + T +++LLN+++ +L N+ K+ + +++ L GER+
Sbjct: 204 AKHEIRRLTEEVELLNQQVDELANLKKIAEKQMEEALETLQGERE 248
>sp|P75260|Y138_MYCPN Hypothetical UPF0134 protein MPN138 (E07_orf166)
Length = 166
Score = 37.0 bits (84), Expect = 0.042
Identities = 31/95 (32%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +2
Query: 53 KLNKKLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKEFEELER 232
KLNK + + +++ KEFN+ K S +++ ++ + D L V + ++LE
Sbjct: 49 KLNKPVIPVNTEYVT------RKEFNEYKDSNDQRLTKIENKV--DKLEV---KVDKLEE 97
Query: 233 KCDEQTRKIDLLNEEIVKLR-NVDKLMREDLDKLK 334
K D+ K+D L E++ KL VDKL E +DKL+
Sbjct: 98 KVDKLEAKVDKLEEKVDKLEAKVDKL-EEKVDKLE 131
>sp|Q59037|SMC_METJA Chromosome partition protein smc homolog
Length = 1169
Score = 37.0 bits (84), Expect = 0.042
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 11/109 (10%)
Frame = +2
Query: 44 EIDKLNKKLQEMESKFGIVGKT------NIEKEFNKLKSSLER-KEVRLNVDICGDNLFV 202
+I++LNKK+ E+ +K I+ K +IEK + L+ +R +E+ N+ +
Sbjct: 837 KIEELNKKVSELINKKVILEKNISFYKESIEKNLSILEEKRKRYEELAKNLKELTEKKEQ 896
Query: 203 FQKEFEELERKCDEQTRKI----DLLNEEIVKLRNVDKLMREDLDKLKL 337
+KE E LER+ E RK+ + +NE +V+ + + E+ KL L
Sbjct: 897 LEKEIETLERERREILRKVRDIENRINELMVEKAKYESKLEEEERKLYL 945
Score = 33.9 bits (76), Expect = 0.36
Identities = 34/121 (28%), Positives = 60/121 (49%), Gaps = 11/121 (9%)
Frame = +2
Query: 11 DEIFKYLSL*IEIDKLNKKLQEMESKFGIVGKTNIEKEFN-----KLKSSLER------K 157
DEI K + E+ +L K+L ++++ ++ + N E E N KLK LE K
Sbjct: 398 DEIAKNQN---ELYRLKKELNDLDN---LINRKNFEIEKNNEMIKKLKEELETVEDVDTK 451
Query: 158 EVRLNVDICGDNLFVFQKEFEELERKCDEQTRKIDLLNEEIVKLRNVDKLMREDLDKLKL 337
+ L ++ + ++ +ELE K E K+D L+ E VK K ++E +++L +
Sbjct: 452 PLYLELENLNVEIEFSKRGIKELEEKKKELQAKLDELHAEYVKENARIKALKE-MEELSM 510
Query: 338 D 340
D
Sbjct: 511 D 511
>sp|Q9NG56|TPM_BLAGE Tropomyosin
Length = 284
Score = 36.6 bits (83), Expect = 0.055
Identities = 21/87 (24%), Positives = 42/87 (48%)
Frame = +2
Query: 65 KLQEMESKFGIVGKTNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKEFEELERKCDE 244
K+ E+E + +VG E ++ K++L +E + + L + E ER +
Sbjct: 189 KIVELEEELRVVGNNLKSLEVSEEKANLREEEYKQQIKTLNTRLKEAEARAEFAERSVQK 248
Query: 245 QTRKIDLLNEEIVKLRNVDKLMREDLD 325
+++D L +E+V + K + +DLD
Sbjct: 249 LQKEVDRLEDELVHEKEKYKYICDDLD 275
>sp|Q9LME2|Y1226_ARATH Hypothetical protein At1g22260
Length = 871
Score = 36.2 bits (82), Expect = 0.072
Identities = 24/95 (25%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Frame = +2
Query: 47 IDKLNKKLQEMESKFGIVGK--TNIEKEFNKLKSSLERKEVRLNVDICGDNLFVFQKE-- 214
ID LN+++++M + + T+ +KE +LK ++KE+ + CG + +K+
Sbjct: 153 IDSLNQQMRDMSLRLDAAKEEITSRDKELEELKLEKQQKEMFYQTERCGTASLIEKKDAV 212
Query: 215 FEELERKCDEQTRKIDLLNEEIVKLRNVDKLMRED 319
+LE E+ I+ LN ++ K+ +++ +ED
Sbjct: 213 ITKLEASAAERKLNIENLNSQLEKV-HLELTTKED 246
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,461,313
Number of Sequences: 369166
Number of extensions: 1032301
Number of successful extensions: 4306
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4281
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5072399280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)