Planaria EST Database


DrC_03021

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03021
         (354 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYM8|UB7I3_HUMAN  Ubiquitin-conjugating enzyme 7-intera...    72   4e-13
sp|Q9WUB0|UB7I3_MOUSE  Ubiquitin-conjugating enzyme 7-intera...    72   5e-13
sp|Q62921|UB7I3_RAT  Ubiquitin-conjugating enzyme 7-interact...    72   5e-13
sp|P36113|YKZ7_YEAST  Hypothetical 63.6 kDa protein in YPT52...    46   3e-05
sp|O95376|ARI2_HUMAN  Ariadne-2 protein homolog (ARI-2) (Tri...    42   6e-04
sp|Q9Z1K6|ARI2_MOUSE  Ariadne-2 protein homolog (ARI-2) (Tri...    42   6e-04
sp|Q22431|ARI2_CAEEL  Probable ariadne-2 protein (Ari-2)           41   7e-04
sp|Q6ZPS6|AKIB1_MOUSE  Ankyrin repeat and IBR domain contain...    40   0.001
sp|Q9P2G1|AKIB1_HUMAN  Ankyrin repeat and IBR domain contain...    40   0.001
sp|O76924|ARI2_DROME  Ariadne-2 protein (Ari-2)                    40   0.002
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
           virus X-associated protein 4) (HBV-associated factor 4)
           (RING finger protein 54)
          Length = 500

 Score = 72.0 bits (175), Expect = 4e-13
 Identities = 27/61 (44%), Positives = 35/61 (57%)
 Frame = +2

Query: 2   RCPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGRGDTSXXXXXXXXXXRCHEK 181
           RCP C+ +++K  GC+WI+C  C  E CW+ + PRWGP G GDTS           CH  
Sbjct: 436 RCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPS 495

Query: 182 C 184
           C
Sbjct: 496 C 496
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
           (UbcM4-interacting protein 28)
          Length = 498

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 27/60 (45%), Positives = 34/60 (56%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGRGDTSXXXXXXXXXXRCHEKC 184
           CP CR +++K  GC+WI+C  C  E CW+ + PRWGP G GDTS           CH  C
Sbjct: 435 CPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSC 494
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
           interacting with PKC) (Protein kinase C-binding protein
           beta-15)
          Length = 498

 Score = 71.6 bits (174), Expect = 5e-13
 Identities = 27/60 (45%), Positives = 34/60 (56%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGRGDTSXXXXXXXXXXRCHEKC 184
           CP CR +++K  GC+WI+C  C  E CW+ + PRWGP G GDTS           CH  C
Sbjct: 435 CPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSC 494
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
          Length = 551

 Score = 45.8 bits (107), Expect = 3e-05
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGR 124
           CP C   +EK  GCN + C  C  E CWI + P W P G+
Sbjct: 341 CPKCSVNIEKNGGCNHMVCSSCKYEFCWICEGP-WAPHGK 379
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
          Length = 493

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
           CP C   +EK  GCN +QC KC  + CW+
Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWM 325
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
           (UbcM4-interacting protein 48)
          Length = 492

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
           CP C   +EK  GCN +QC KC  + CW+
Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWM 324
>sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2)
          Length = 482

 Score = 41.2 bits (95), Expect = 7e-04
 Identities = 14/29 (48%), Positives = 18/29 (62%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
           CP C + +EK  GCN IQC +C    CW+
Sbjct: 287 CPQCHSCIEKAGGCNHIQCTRCRHHFCWM 315
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain containing protein 1
          Length = 1087

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
           C  C++ ++K  GCN +QC KC  + CWI
Sbjct: 522 CANCKSPIQKNEGCNHMQCAKCKYDFCWI 550
>sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain containing protein 1
          Length = 1214

 Score = 40.4 bits (93), Expect = 0.001
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
           C  C++ ++K  GCN +QC KC  + CWI
Sbjct: 644 CANCKSPIQKNEGCNHMQCAKCKYDFCWI 672
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
          Length = 509

 Score = 39.7 bits (91), Expect = 0.002
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 5   CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
           CP C   +EK  GCN +QC  C  + CW+
Sbjct: 311 CPKCHICIEKNGGCNHMQCFNCKHDFCWM 339
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,430,742
Number of Sequences: 369166
Number of extensions: 813761
Number of successful extensions: 2438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)