Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E23
(354 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-intera... 72 4e-13
sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-intera... 72 5e-13
sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interact... 72 5e-13
sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52... 46 3e-05
sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Tri... 42 6e-04
sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Tri... 42 6e-04
sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2) 41 7e-04
sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain contain... 40 0.001
sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain contain... 40 0.001
sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2) 40 0.002
>sp|Q9BYM8|UB7I3_HUMAN Ubiquitin-conjugating enzyme 7-interacting protein 3 (Hepatitis B
virus X-associated protein 4) (HBV-associated factor 4)
(RING finger protein 54)
Length = 500
Score = 72.0 bits (175), Expect = 4e-13
Identities = 27/61 (44%), Positives = 35/61 (57%)
Frame = +2
Query: 2 RCPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGRGDTSXXXXXXXXXXRCHEK 181
RCP C+ +++K GC+WI+C C E CW+ + PRWGP G GDTS CH
Sbjct: 436 RCPQCQIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPS 495
Query: 182 C 184
C
Sbjct: 496 C 496
>sp|Q9WUB0|UB7I3_MOUSE Ubiquitin-conjugating enzyme 7-interacting protein 3
(UbcM4-interacting protein 28)
Length = 498
Score = 71.6 bits (174), Expect = 5e-13
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGRGDTSXXXXXXXXXXRCHEKC 184
CP CR +++K GC+WI+C C E CW+ + PRWGP G GDTS CH C
Sbjct: 435 CPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSC 494
>sp|Q62921|UB7I3_RAT Ubiquitin-conjugating enzyme 7-interacting protein 3 (RBCC protein
interacting with PKC) (Protein kinase C-binding protein
beta-15)
Length = 498
Score = 71.6 bits (174), Expect = 5e-13
Identities = 27/60 (45%), Positives = 34/60 (56%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGRGDTSXXXXXXXXXXRCHEKC 184
CP CR +++K GC+WI+C C E CW+ + PRWGP G GDTS CH C
Sbjct: 435 CPQCRIVVQKKDGCDWIRCTVCHTEICWVTKGPRWGPGGPGDTSGGCRCRVNGIPCHPSC 494
>sp|P36113|YKZ7_YEAST Hypothetical 63.6 kDa protein in YPT52-GCN3 intergenic region
Length = 551
Score = 45.8 bits (107), Expect = 3e-05
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWILQIPRWGPKGR 124
CP C +EK GCN + C C E CWI + P W P G+
Sbjct: 341 CPKCSVNIEKNGGCNHMVCSSCKYEFCWICEGP-WAPHGK 379
>sp|O95376|ARI2_HUMAN Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
Length = 493
Score = 41.6 bits (96), Expect = 6e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
CP C +EK GCN +QC KC + CW+
Sbjct: 297 CPKCNICIEKNGGCNHMQCSKCKHDFCWM 325
>sp|Q9Z1K6|ARI2_MOUSE Ariadne-2 protein homolog (ARI-2) (Triad1 protein)
(UbcM4-interacting protein 48)
Length = 492
Score = 41.6 bits (96), Expect = 6e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
CP C +EK GCN +QC KC + CW+
Sbjct: 296 CPKCNICIEKNGGCNHMQCSKCKHDFCWM 324
>sp|Q22431|ARI2_CAEEL Probable ariadne-2 protein (Ari-2)
Length = 482
Score = 41.2 bits (95), Expect = 7e-04
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
CP C + +EK GCN IQC +C CW+
Sbjct: 287 CPQCHSCIEKAGGCNHIQCTRCRHHFCWM 315
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain containing protein 1
Length = 1087
Score = 40.4 bits (93), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
C C++ ++K GCN +QC KC + CWI
Sbjct: 522 CANCKSPIQKNEGCNHMQCAKCKYDFCWI 550
>sp|Q9P2G1|AKIB1_HUMAN Ankyrin repeat and IBR domain containing protein 1
Length = 1214
Score = 40.4 bits (93), Expect = 0.001
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
C C++ ++K GCN +QC KC + CWI
Sbjct: 644 CANCKSPIQKNEGCNHMQCAKCKYDFCWI 672
>sp|O76924|ARI2_DROME Ariadne-2 protein (Ari-2)
Length = 509
Score = 39.7 bits (91), Expect = 0.002
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 5 CPGCRTILEKTSGCNWIQCHKCLLECCWI 91
CP C +EK GCN +QC C + CW+
Sbjct: 311 CPKCHICIEKNGGCNHMQCFNCKHDFCWM 339
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,430,742
Number of Sequences: 369166
Number of extensions: 813761
Number of successful extensions: 2438
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)