Planaria EST Database


DrC_03019

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03019
         (635 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40507|YIH9_YEAST  Hypothetical 41.6 kDa protein in SDS3-...    35   0.21 
sp|Q80TT8|PARC_MOUSE  p53-associated parkin-like cytoplasmic...    34   0.36 
sp|Q8IWT3|PARC_HUMAN  p53-associated parkin-like cytoplasmic...    33   0.61 
sp|Q9H1U4|EGFL5_HUMAN  Multiple EGF-like-domain protein 5 pr...    33   0.80 
sp|P19137|LAMA1_MOUSE  Laminin alpha-1 chain precursor (Lami...    32   1.4  
sp|P24043|LAMA2_HUMAN  Laminin alpha-2 chain precursor (Lami...    32   1.8  
sp|Q9SX97|DOF16_ARATH  Hypothetical Dof zinc finger protein ...    30   4.0  
sp|Q21313|LAML2_CAEEL  Laminin-like protein K08C7.3 precursor      30   5.2  
sp|Q60675|LAMA2_MOUSE  Laminin alpha-2 chain precursor (Lami...    30   5.2  
sp|P24911|PRTP_SHV21  Probable processing and transport protein    30   6.8  
>sp|P40507|YIH9_YEAST Hypothetical 41.6 kDa protein in SDS3-THS1 intergenic region
          Length = 360

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
 Frame = +2

Query: 233 CPKCQCTNHAFMRPFRPNESPKKLICRHCNAD--------------FCEKCRRSPFHGRT 370
           CP   CT   FM        PK +IC +CNA+              FC  C  S  H R 
Sbjct: 89  CPHVICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKVFCTLC-NSKRHSR- 146

Query: 371 ESCPS 385
           E CPS
Sbjct: 147 ERCPS 151
>sp|Q80TT8|PARC_MOUSE p53-associated parkin-like cytoplasmic protein
          Length = 1865

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 233  CPKCQCTNHAFMRPFRPNESPKKLICRHCNADFCEKCRRS--PFHGRTESCPSRLDRVS 403
            CP CQ        P   NE    + C  CN  FC +C +S  P H    +C + + + +
Sbjct: 1575 CPSCQA-------PIEKNEGCLHMTCARCNHGFCWRCLKSWKPSHKDYYNCSAMVSKAA 1626
>sp|Q8IWT3|PARC_HUMAN p53-associated parkin-like cytoplasmic protein (UbcH7 associated
            protein 1)
          Length = 2517

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = +2

Query: 233  CPKCQCTNHAFMRPFRPNESPKKLICRHCNADFCEKCRRS--PFHGRTESCPSRLDRVS 403
            CP CQ        P   NE    + C  CN  FC +C +S  P H    +C + + + +
Sbjct: 2236 CPSCQA-------PIEKNEGCLHMTCAKCNHGFCWRCLKSWKPNHKDYYNCSAMVSKAA 2287
>sp|Q9H1U4|EGFL5_HUMAN Multiple EGF-like-domain protein 5 precursor (Multiple epidermal
           growth factor-like domains 9)
          Length = 600

 Score = 32.7 bits (73), Expect = 0.80
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
 Frame = +2

Query: 170 LKPKVQLAKENSPPPNC---------YRAICPKCQCTNHAFMRPFR-----PNESPKKLI 307
           L+P+    K+    PNC         + +IC KCQC  H  + P +       ES + + 
Sbjct: 365 LEPECDQCKDGYIGPNCNKCENGYYNFDSICRKCQC--HGHVDPVKTPKICKPESGECIN 422

Query: 308 CRHCNADF-CEKCRRSPFHGRTESC 379
           C H    F CE C     H    +C
Sbjct: 423 CLHNTTGFWCENCLEGYVHDLEGNC 447
>sp|P19137|LAMA1_MOUSE Laminin alpha-1 chain precursor (Laminin A chain)
          Length = 3084

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 185  QLAKENSPPPNCYRAICPKCQCTNHAFMRPFRPNESPKKLICR-HCNADFCEKCRRSPFH 361
            +L +     P    A C  C C NH+        E+ K L CR H + D CE C  S ++
Sbjct: 1391 KLPESGGRGPRPLLAPCVPCNCNNHS---DVCDPETGKCLSCRDHTSGDHCELC-ASGYY 1446

Query: 362  GRTESCP 382
            G+    P
Sbjct: 1447 GKVTGLP 1453
>sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
            chain)
          Length = 3110

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
 Frame = +2

Query: 233  CPKCQCTNHAFMRPFRPNESPKKLICRHCN----ADFCEKCRRSPFHGRTESCPS 385
            C  CQC  H+ +        P+  IC++C      DFCE+C    ++G  +  P+
Sbjct: 1417 CVPCQCNGHSSLC------DPETSICQNCQHHTAGDFCERCALG-YYGIVKGLPN 1464
>sp|Q9SX97|DOF16_ARATH Hypothetical Dof zinc finger protein DOF1.6 (AtDOF1.6)
          Length = 209

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
 Frame = +2

Query: 146 LPAANTHSLKPKVQLAKENSPPPNCYRAI-CPKCQCTNHAFMRPFRPNESPKKLICRHCN 322
           +P+    +   +VQ +    PPPN    + CP+C  T   F      N +  +  C+ C 
Sbjct: 1   MPSEPNQTRPTRVQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCR 60

Query: 323 ADFCE--KCRRSPFHGRTESCPSRLDRVSFS 409
             + +    R  P  G T    S+  R SFS
Sbjct: 61  RYWTQGGTLRDVPVGGGTRRSSSKRHR-SFS 90
>sp|Q21313|LAML2_CAEEL Laminin-like protein K08C7.3 precursor
          Length = 3672

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = +2

Query: 239 KCQCTNHAFMRPFRPNESPKKLICR---HCNADFCEKC 343
           +C C  HA        + PK L+CR   +   D CE+C
Sbjct: 297 RCVCNGHAVTCDILEPQRPKSLLCRCEHNTCGDMCERC 334
>sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
            chain)
          Length = 3106

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
 Frame = +2

Query: 233  CPKCQCTNHAFMRPFRPNESPKKLICRHCN----ADFCEKC 343
            C  CQC  H+          P+  +C++C      DFCE+C
Sbjct: 1413 CVPCQCNGHSSQC------DPETSVCQNCQHHTAGDFCERC 1447
>sp|P24911|PRTP_SHV21 Probable processing and transport protein
          Length = 679

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 206 PPPNCYRAICPKCQCTNHAFMRPFRPNESPKKLICRHCNADFCEKCRRSPFHGRTES 376
           P P+ Y +  P   C N   M P +    P  ++C +C    C++    P  G  E+
Sbjct: 169 PLPDTYLSNIPCIYCLNEHMMLPNQGESLPSLMMCVNCK-HVCKQLNPEPIQGMFEN 224
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,002,578
Number of Sequences: 369166
Number of extensions: 1424121
Number of successful extensions: 3672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3669
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)