Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_E15
(635 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P40507|YIH9_YEAST Hypothetical 41.6 kDa protein in SDS3-... 35 0.21
sp|Q80TT8|PARC_MOUSE p53-associated parkin-like cytoplasmic... 34 0.36
sp|Q8IWT3|PARC_HUMAN p53-associated parkin-like cytoplasmic... 33 0.61
sp|Q9H1U4|EGFL5_HUMAN Multiple EGF-like-domain protein 5 pr... 33 0.80
sp|P19137|LAMA1_MOUSE Laminin alpha-1 chain precursor (Lami... 32 1.4
sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Lami... 32 1.8
sp|Q9SX97|DOF16_ARATH Hypothetical Dof zinc finger protein ... 30 4.0
sp|Q21313|LAML2_CAEEL Laminin-like protein K08C7.3 precursor 30 5.2
sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Lami... 30 5.2
sp|P24911|PRTP_SHV21 Probable processing and transport protein 30 6.8
>sp|P40507|YIH9_YEAST Hypothetical 41.6 kDa protein in SDS3-THS1 intergenic region
Length = 360
Score = 34.7 bits (78), Expect = 0.21
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Frame = +2
Query: 233 CPKCQCTNHAFMRPFRPNESPKKLICRHCNAD--------------FCEKCRRSPFHGRT 370
CP CT FM PK +IC +CNA+ FC C S H R
Sbjct: 89 CPHVICTYCGFMDDHYSQHCPKAIICTNCNANGHYKSQCPHKWKKVFCTLC-NSKRHSR- 146
Query: 371 ESCPS 385
E CPS
Sbjct: 147 ERCPS 151
>sp|Q80TT8|PARC_MOUSE p53-associated parkin-like cytoplasmic protein
Length = 1865
Score = 33.9 bits (76), Expect = 0.36
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 233 CPKCQCTNHAFMRPFRPNESPKKLICRHCNADFCEKCRRS--PFHGRTESCPSRLDRVS 403
CP CQ P NE + C CN FC +C +S P H +C + + + +
Sbjct: 1575 CPSCQA-------PIEKNEGCLHMTCARCNHGFCWRCLKSWKPSHKDYYNCSAMVSKAA 1626
>sp|Q8IWT3|PARC_HUMAN p53-associated parkin-like cytoplasmic protein (UbcH7 associated
protein 1)
Length = 2517
Score = 33.1 bits (74), Expect = 0.61
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Frame = +2
Query: 233 CPKCQCTNHAFMRPFRPNESPKKLICRHCNADFCEKCRRS--PFHGRTESCPSRLDRVS 403
CP CQ P NE + C CN FC +C +S P H +C + + + +
Sbjct: 2236 CPSCQA-------PIEKNEGCLHMTCAKCNHGFCWRCLKSWKPNHKDYYNCSAMVSKAA 2287
>sp|Q9H1U4|EGFL5_HUMAN Multiple EGF-like-domain protein 5 precursor (Multiple epidermal
growth factor-like domains 9)
Length = 600
Score = 32.7 bits (73), Expect = 0.80
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Frame = +2
Query: 170 LKPKVQLAKENSPPPNC---------YRAICPKCQCTNHAFMRPFR-----PNESPKKLI 307
L+P+ K+ PNC + +IC KCQC H + P + ES + +
Sbjct: 365 LEPECDQCKDGYIGPNCNKCENGYYNFDSICRKCQC--HGHVDPVKTPKICKPESGECIN 422
Query: 308 CRHCNADF-CEKCRRSPFHGRTESC 379
C H F CE C H +C
Sbjct: 423 CLHNTTGFWCENCLEGYVHDLEGNC 447
>sp|P19137|LAMA1_MOUSE Laminin alpha-1 chain precursor (Laminin A chain)
Length = 3084
Score = 32.0 bits (71), Expect = 1.4
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 185 QLAKENSPPPNCYRAICPKCQCTNHAFMRPFRPNESPKKLICR-HCNADFCEKCRRSPFH 361
+L + P A C C C NH+ E+ K L CR H + D CE C S ++
Sbjct: 1391 KLPESGGRGPRPLLAPCVPCNCNNHS---DVCDPETGKCLSCRDHTSGDHCELC-ASGYY 1446
Query: 362 GRTESCP 382
G+ P
Sbjct: 1447 GKVTGLP 1453
>sp|P24043|LAMA2_HUMAN Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3110
Score = 31.6 bits (70), Expect = 1.8
Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Frame = +2
Query: 233 CPKCQCTNHAFMRPFRPNESPKKLICRHCN----ADFCEKCRRSPFHGRTESCPS 385
C CQC H+ + P+ IC++C DFCE+C ++G + P+
Sbjct: 1417 CVPCQCNGHSSLC------DPETSICQNCQHHTAGDFCERCALG-YYGIVKGLPN 1464
>sp|Q9SX97|DOF16_ARATH Hypothetical Dof zinc finger protein DOF1.6 (AtDOF1.6)
Length = 209
Score = 30.4 bits (67), Expect = 4.0
Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Frame = +2
Query: 146 LPAANTHSLKPKVQLAKENSPPPNCYRAI-CPKCQCTNHAFMRPFRPNESPKKLICRHCN 322
+P+ + +VQ + PPPN + CP+C T F N + + C+ C
Sbjct: 1 MPSEPNQTRPTRVQPSTAAYPPPNLAEPLPCPRCNSTTTKFCYYNNYNLAQPRYYCKSCR 60
Query: 323 ADFCE--KCRRSPFHGRTESCPSRLDRVSFS 409
+ + R P G T S+ R SFS
Sbjct: 61 RYWTQGGTLRDVPVGGGTRRSSSKRHR-SFS 90
>sp|Q21313|LAML2_CAEEL Laminin-like protein K08C7.3 precursor
Length = 3672
Score = 30.0 bits (66), Expect = 5.2
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Frame = +2
Query: 239 KCQCTNHAFMRPFRPNESPKKLICR---HCNADFCEKC 343
+C C HA + PK L+CR + D CE+C
Sbjct: 297 RCVCNGHAVTCDILEPQRPKSLLCRCEHNTCGDMCERC 334
>sp|Q60675|LAMA2_MOUSE Laminin alpha-2 chain precursor (Laminin M chain) (Merosin heavy
chain)
Length = 3106
Score = 30.0 bits (66), Expect = 5.2
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +2
Query: 233 CPKCQCTNHAFMRPFRPNESPKKLICRHCN----ADFCEKC 343
C CQC H+ P+ +C++C DFCE+C
Sbjct: 1413 CVPCQCNGHSSQC------DPETSVCQNCQHHTAGDFCERC 1447
>sp|P24911|PRTP_SHV21 Probable processing and transport protein
Length = 679
Score = 29.6 bits (65), Expect = 6.8
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = +2
Query: 206 PPPNCYRAICPKCQCTNHAFMRPFRPNESPKKLICRHCNADFCEKCRRSPFHGRTES 376
P P+ Y + P C N M P + P ++C +C C++ P G E+
Sbjct: 169 PLPDTYLSNIPCIYCLNEHMMLPNQGESLPSLMMCVNCK-HVCKQLNPEPIQGMFEN 224
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,002,578
Number of Sequences: 369166
Number of extensions: 1424121
Number of successful extensions: 3672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3669
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5121172350
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)