Planaria EST Database


DrC_03013

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03013
         (791 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P14196|AAC2_DICDI  AAC-rich mRNA clone AAC11 protein            36   0.14 
sp|P40070|LSM4_YEAST  U6 snRNA-associated Sm-like protein LSm4     34   0.52 
sp|P32047|MLF3_YEAST  Protein MLF3 (Multicopy suppressor of ...    34   0.52 
sp|P04931|ARP_PLAFA  Asparagine-rich protein (AG319) (ARP)         32   2.0  
sp|P32770|NRP1_YEAST  Asparagine-rich protein (ARP protein)        32   2.6  
sp|P09547|SWI1_YEAST  Transcription regulatory protein SWI1 ...    31   3.4  
sp|Q24248|ARA_DROME  Homeobox protein araucan                      31   4.4  
sp|P12724|ECP_HUMAN  Eosinophil cationic protein precursor (...    30   5.8  
sp|P47780|ECP_PANTR  Eosinophil cationic protein precursor (...    30   5.8  
sp|P54637|PTP3_DICDI  Tyrosine-protein phosphatase 3 (Protei...    30   5.8  
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
          Length = 448

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 25/93 (26%), Positives = 35/93 (37%)
 Frame = +1

Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
           N  NN  SN  +  +N     N++   N    N  T  +       +      TNN+ +N
Sbjct: 286 NNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNN 345

Query: 403 IDNQANFIRTMAANIVLSLQNSQPNNAPFMNPN 501
            +NQ      M  N   S  N+ PNN    N N
Sbjct: 346 ANNQNTNNNNMGNN---SNNNNNPNNNNHQNNN 375
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4
          Length = 187

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
 Frame = +1

Query: 166 VKVPEPIVDKV----------NSSKPVVKNTPNNKASNKYDMPANKQRKMNSNGKMNQAV 315
           +K+ + I+DKV          NS+ P  K   NN+ SN  +   N  R+ N+NG  N+  
Sbjct: 79  IKLQDNIIDKVKQQINSNNNSNSNGPGHKRYYNNRDSN--NNRGNYNRRNNNNGNSNR-- 134

Query: 316 YNLQTMGSVRMPGQPVRFEAKGTNNSRSNIDNQANFIRTMAANIVLSLQNSQPNNAPFMN 495
                        +P     +  N++ SNI+N  N I +   N+   L  S  ++    +
Sbjct: 135 -------------RPYSQNRQYNNSNSSNINNSINSINSNNQNMNNGLGGSVQHHFNSSS 181

Query: 496 PNVMRF 513
           P  + F
Sbjct: 182 PQKVEF 187
>sp|P32047|MLF3_YEAST Protein MLF3 (Multicopy suppressor of leflunomide sensitivity 3)
          Length = 452

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = +1

Query: 199 NSSKP--VVKNTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFE 372
           N+S P  + + T    +SN   +         S+   + + YNLQT+  + + G  VR  
Sbjct: 9   NNSNPSFIFERTVQEASSNDLFLQPPVSASNTSHSSRSNSFYNLQTISPIPISGSEVRTP 68

Query: 373 A--KGTNNSRSNIDNQANFIRTMAANIVLSLQNSQPNNAPFMN 495
           +  K +NN  S +DN     R+ + +   SL + +    P  N
Sbjct: 69  SLRKNSNNVSSPLDNVIPTSRSASNSTTSSLAHQEYILNPICN 111
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
          Length = 537

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +1

Query: 220 KNTPNNKASNKYDMPANKQRKMNSNGKMNQAV-YNLQTMGSVRMPGQPVRFEAKGTNNSR 396
           KN+ NN  +N  +   N     N N  MN  + +N+    +  M            NN+ 
Sbjct: 264 KNSMNNNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNHNM------------NNNM 311

Query: 397 SNIDN-QANFIRTMAANIVLSLQNSQPNNAPFMNPNVMRF 513
           +NI++  ++      A++ +S+ N   N +   NPN M F
Sbjct: 312 NNINSLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNF 351
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
          Length = 719

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 32/131 (24%), Positives = 46/131 (35%)
 Frame = +1

Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
           N  NN  +N+Y++  N     N NG  +    N     +             G+ NS SN
Sbjct: 498 NNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHN--------NNHHNGSINSNSN 549

Query: 403 IDNQANFIRTMAANIVLSLQNSQPNNAPFMNPNVMRFGGPLPRVPFTNNIKFCKSCNFQN 582
            +N  N              N+  NN+   N N+   GG    +PF      C +C + N
Sbjct: 550 TNNNNN--------------NNNGNNSNNCNSNI-GMGGCGSNMPFRAGDWKCSTCTYHN 594

Query: 583 HNPGNPFCQNC 615
               N  C  C
Sbjct: 595 F-AKNVVCLRC 604
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
           SWI1) (Transcription regulatory protein ADR6)
           (Regulatory protein GAM3)
          Length = 1314

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
 Frame = +1

Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
           N  NN  +N  + PAN     NS G  +    N                    TN   S 
Sbjct: 25  NNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNN---------------NNTNTGASG 69

Query: 403 IDNQANFI--RTMAANIVLSLQNSQPNNAPFMNPNVM----RFGGPLPRV--PFTNNIKF 558
           +D+  NF   +    N+  +  NS  NN    N N +     F  P   V      N+  
Sbjct: 70  VDDFQNFFDPKPFDQNLDSNNNNSNSNNNDNNNSNTVASSTNFTSPTAVVNNAAPANVTG 129

Query: 559 CKSCNF-QNHNP--GNPFCQN 612
            K+ NF QN +P   +P+  N
Sbjct: 130 GKAANFIQNQSPQFNSPYDSN 150
>sp|Q24248|ARA_DROME Homeobox protein araucan
          Length = 717

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 25/120 (20%), Positives = 48/120 (40%)
 Frame = +1

Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
           +T NN      +MP  +Q+      ++ Q    + T GS   P  P++F  +     +  
Sbjct: 547 HTTNNSIPYS-NMPPQQQQPQQQQQQLQQGG-TIHTTGSSSGPIIPLQFHNRHPQQQQQ- 603

Query: 403 IDNQANFIRTMAANIVLSLQNSQPNNAPFMNPNVMRFGGPLPRVPFTNNIKFCKSCNFQN 582
           +  Q+   ++ A+   +    +QP+  P   PN+    G L  +P    +    +C   N
Sbjct: 604 LQQQS---QSTASQRAMGFLEAQPDTPPQTPPNMKVLSGALSLLPTATQVPMTATCRSSN 660
>sp|P12724|ECP_HUMAN Eosinophil cationic protein precursor (ECP) (Ribonuclease 3) (RNase
           3)
          Length = 160

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
 Frame = +1

Query: 376 KGTNNSRSNIDNQANFIRTMAANIVLSLQNSQ---PNNAPFMNPNVMRFGGPLPRV---- 534
           +  NN R    NQ  F+RT  AN+V    N     P+N    N +  RF  PL       
Sbjct: 55  RAINNYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDLIN 114

Query: 535 PFTNNIKFCKSCNFQNHNPGNPF 603
           P   NI  C+  +     PG  F
Sbjct: 115 PGAQNISNCRYAD----RPGRRF 133
>sp|P47780|ECP_PANTR Eosinophil cationic protein precursor (ECP) (Ribonuclease 3) (RNase
           3)
          Length = 160

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = +1

Query: 385 NNSRSNIDNQANFIRTMAANIVLSLQNSQ---PNNAPFMNPNVMRFGGPLPRV----PFT 543
           NN R    NQ  F+RT  AN+V    N     P+N    N +  RF  PL       P  
Sbjct: 58  NNYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHQSRFRVPLLHCDLINPGA 117

Query: 544 NNIKFCKSCNFQNHNPGNPF 603
            NI  C+  +     PG  F
Sbjct: 118 QNISNCRYAD----RPGRRF 133
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
           phosphohydrolase 3)
          Length = 989

 Score = 30.4 bits (67), Expect = 5.8
 Identities = 26/116 (22%), Positives = 45/116 (38%)
 Frame = +1

Query: 145 DKPKTNIVKVPEPIVDKVNSSKPVVKNTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNL 324
           DK  TN +K+   ++ K N++     N  NN  +N  +   N     N+N   N      
Sbjct: 120 DKFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------ 173

Query: 325 QTMGSVRMPGQPVRFEAKGTNNSRSNIDNQANFIRTMAANIVLSLQNSQPNNAPFM 492
                               NN+ +N +N +N      +NI +++ + Q +N P M
Sbjct: 174 -----------------NNNNNNNNNNNNNSN------SNIEINVPSIQFDNEPAM 206
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,624,788
Number of Sequences: 369166
Number of extensions: 1615144
Number of successful extensions: 4447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4417
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)