Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_028_D05
(791 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein 36 0.14
sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4 34 0.52
sp|P32047|MLF3_YEAST Protein MLF3 (Multicopy suppressor of ... 34 0.52
sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP) 32 2.0
sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein) 32 2.6
sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 ... 31 3.4
sp|Q24248|ARA_DROME Homeobox protein araucan 31 4.4
sp|P12724|ECP_HUMAN Eosinophil cationic protein precursor (... 30 5.8
sp|P47780|ECP_PANTR Eosinophil cationic protein precursor (... 30 5.8
sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protei... 30 5.8
>sp|P14196|AAC2_DICDI AAC-rich mRNA clone AAC11 protein
Length = 448
Score = 35.8 bits (81), Expect = 0.14
Identities = 25/93 (26%), Positives = 35/93 (37%)
Frame = +1
Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
N NN SN + +N N++ N N T + + TNN+ +N
Sbjct: 286 NNNNNNNSNNNNNSSNNNNNNNNSTNNNTNNNNNNTNNNTNNNNNNINNNNNNTNNNNNN 345
Query: 403 IDNQANFIRTMAANIVLSLQNSQPNNAPFMNPN 501
+NQ M N S N+ PNN N N
Sbjct: 346 ANNQNTNNNNMGNN---SNNNNNPNNNNHQNNN 375
>sp|P40070|LSM4_YEAST U6 snRNA-associated Sm-like protein LSm4
Length = 187
Score = 33.9 bits (76), Expect = 0.52
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 10/126 (7%)
Frame = +1
Query: 166 VKVPEPIVDKV----------NSSKPVVKNTPNNKASNKYDMPANKQRKMNSNGKMNQAV 315
+K+ + I+DKV NS+ P K NN+ SN + N R+ N+NG N+
Sbjct: 79 IKLQDNIIDKVKQQINSNNNSNSNGPGHKRYYNNRDSN--NNRGNYNRRNNNNGNSNR-- 134
Query: 316 YNLQTMGSVRMPGQPVRFEAKGTNNSRSNIDNQANFIRTMAANIVLSLQNSQPNNAPFMN 495
+P + N++ SNI+N N I + N+ L S ++ +
Sbjct: 135 -------------RPYSQNRQYNNSNSSNINNSINSINSNNQNMNNGLGGSVQHHFNSSS 181
Query: 496 PNVMRF 513
P + F
Sbjct: 182 PQKVEF 187
>sp|P32047|MLF3_YEAST Protein MLF3 (Multicopy suppressor of leflunomide sensitivity 3)
Length = 452
Score = 33.9 bits (76), Expect = 0.52
Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
Frame = +1
Query: 199 NSSKP--VVKNTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFE 372
N+S P + + T +SN + S+ + + YNLQT+ + + G VR
Sbjct: 9 NNSNPSFIFERTVQEASSNDLFLQPPVSASNTSHSSRSNSFYNLQTISPIPISGSEVRTP 68
Query: 373 A--KGTNNSRSNIDNQANFIRTMAANIVLSLQNSQPNNAPFMN 495
+ K +NN S +DN R+ + + SL + + P N
Sbjct: 69 SLRKNSNNVSSPLDNVIPTSRSASNSTTSSLAHQEYILNPICN 111
>sp|P04931|ARP_PLAFA Asparagine-rich protein (AG319) (ARP)
Length = 537
Score = 32.0 bits (71), Expect = 2.0
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Frame = +1
Query: 220 KNTPNNKASNKYDMPANKQRKMNSNGKMNQAV-YNLQTMGSVRMPGQPVRFEAKGTNNSR 396
KN+ NN +N + N N N MN + +N+ + M NN+
Sbjct: 264 KNSMNNNMNNNMNNNMNHNMNNNMNHNMNNNMNHNMNNNMNHNM------------NNNM 311
Query: 397 SNIDN-QANFIRTMAANIVLSLQNSQPNNAPFMNPNVMRF 513
+NI++ ++ A++ +S+ N N + NPN M F
Sbjct: 312 NNINSLDSDMSPNYHAHVKMSMMNYNNNESNTANPNQMNF 351
>sp|P32770|NRP1_YEAST Asparagine-rich protein (ARP protein)
Length = 719
Score = 31.6 bits (70), Expect = 2.6
Identities = 32/131 (24%), Positives = 46/131 (35%)
Frame = +1
Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
N NN +N+Y++ N N NG + N + G+ NS SN
Sbjct: 498 NNINNMTNNRYNINNNINGNGNGNGNNSNNNNNHNNNHN--------NNHHNGSINSNSN 549
Query: 403 IDNQANFIRTMAANIVLSLQNSQPNNAPFMNPNVMRFGGPLPRVPFTNNIKFCKSCNFQN 582
+N N N+ NN+ N N+ GG +PF C +C + N
Sbjct: 550 TNNNNN--------------NNNGNNSNNCNSNI-GMGGCGSNMPFRAGDWKCSTCTYHN 594
Query: 583 HNPGNPFCQNC 615
N C C
Sbjct: 595 F-AKNVVCLRC 604
>sp|P09547|SWI1_YEAST Transcription regulatory protein SWI1 (SWI/SNF complex component
SWI1) (Transcription regulatory protein ADR6)
(Regulatory protein GAM3)
Length = 1314
Score = 31.2 bits (69), Expect = 3.4
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 11/141 (7%)
Frame = +1
Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
N NN +N + PAN NS G + N TN S
Sbjct: 25 NNTNNNNTNNNNNPANNTNNNNSTGHSSNTNNNTNN---------------NNTNTGASG 69
Query: 403 IDNQANFI--RTMAANIVLSLQNSQPNNAPFMNPNVM----RFGGPLPRV--PFTNNIKF 558
+D+ NF + N+ + NS NN N N + F P V N+
Sbjct: 70 VDDFQNFFDPKPFDQNLDSNNNNSNSNNNDNNNSNTVASSTNFTSPTAVVNNAAPANVTG 129
Query: 559 CKSCNF-QNHNP--GNPFCQN 612
K+ NF QN +P +P+ N
Sbjct: 130 GKAANFIQNQSPQFNSPYDSN 150
>sp|Q24248|ARA_DROME Homeobox protein araucan
Length = 717
Score = 30.8 bits (68), Expect = 4.4
Identities = 25/120 (20%), Positives = 48/120 (40%)
Frame = +1
Query: 223 NTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNLQTMGSVRMPGQPVRFEAKGTNNSRSN 402
+T NN +MP +Q+ ++ Q + T GS P P++F + +
Sbjct: 547 HTTNNSIPYS-NMPPQQQQPQQQQQQLQQGG-TIHTTGSSSGPIIPLQFHNRHPQQQQQ- 603
Query: 403 IDNQANFIRTMAANIVLSLQNSQPNNAPFMNPNVMRFGGPLPRVPFTNNIKFCKSCNFQN 582
+ Q+ ++ A+ + +QP+ P PN+ G L +P + +C N
Sbjct: 604 LQQQS---QSTASQRAMGFLEAQPDTPPQTPPNMKVLSGALSLLPTATQVPMTATCRSSN 660
>sp|P12724|ECP_HUMAN Eosinophil cationic protein precursor (ECP) (Ribonuclease 3) (RNase
3)
Length = 160
Score = 30.4 bits (67), Expect = 5.8
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Frame = +1
Query: 376 KGTNNSRSNIDNQANFIRTMAANIVLSLQNSQ---PNNAPFMNPNVMRFGGPLPRV---- 534
+ NN R NQ F+RT AN+V N P+N N + RF PL
Sbjct: 55 RAINNYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHRSRFRVPLLHCDLIN 114
Query: 535 PFTNNIKFCKSCNFQNHNPGNPF 603
P NI C+ + PG F
Sbjct: 115 PGAQNISNCRYAD----RPGRRF 133
>sp|P47780|ECP_PANTR Eosinophil cationic protein precursor (ECP) (Ribonuclease 3) (RNase
3)
Length = 160
Score = 30.4 bits (67), Expect = 5.8
Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
Frame = +1
Query: 385 NNSRSNIDNQANFIRTMAANIVLSLQNSQ---PNNAPFMNPNVMRFGGPLPRV----PFT 543
NN R NQ F+RT AN+V N P+N N + RF PL P
Sbjct: 58 NNYRWRCKNQNTFLRTTFANVVNVCGNQSIRCPHNRTLNNCHQSRFRVPLLHCDLINPGA 117
Query: 544 NNIKFCKSCNFQNHNPGNPF 603
NI C+ + PG F
Sbjct: 118 QNISNCRYAD----RPGRRF 133
>sp|P54637|PTP3_DICDI Tyrosine-protein phosphatase 3 (Protein-tyrosine-phosphate
phosphohydrolase 3)
Length = 989
Score = 30.4 bits (67), Expect = 5.8
Identities = 26/116 (22%), Positives = 45/116 (38%)
Frame = +1
Query: 145 DKPKTNIVKVPEPIVDKVNSSKPVVKNTPNNKASNKYDMPANKQRKMNSNGKMNQAVYNL 324
DK TN +K+ ++ K N++ N NN +N + N N+N N
Sbjct: 120 DKFDTNALKLSNTMIIKNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------ 173
Query: 325 QTMGSVRMPGQPVRFEAKGTNNSRSNIDNQANFIRTMAANIVLSLQNSQPNNAPFM 492
NN+ +N +N +N +NI +++ + Q +N P M
Sbjct: 174 -----------------NNNNNNNNNNNNNSN------SNIEINVPSIQFDNEPAM 206
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 81,624,788
Number of Sequences: 369166
Number of extensions: 1615144
Number of successful extensions: 4447
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4417
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7425705210
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)