Planaria EST Database


DrC_03010

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03010
         (748 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9W734|SMAD6_CHICK  Mothers against decapentaplegic homol...    41   0.004
sp|O43541|SMAD6_HUMAN  Mothers against decapentaplegic homol...    40   0.009
sp|O35182|SMAD6_MOUSE  Mothers against decapentaplegic homol...    40   0.009
sp|O35253|SMAD7_MOUSE  Mothers against decapentaplegic homol...    39   0.015
sp|O15105|SMAD7_HUMAN  Mothers against decapentaplegic homol...    39   0.015
sp|O88406|SMAD7_RAT  Mothers against decapentaplegic homolog...    39   0.015
sp|Q9JIW5|SMAD9_MOUSE  Mothers against decapentaplegic homol...    36   0.13 
sp|O15198|SMAD9_HUMAN  Mothers against decapentaplegic homol...    36   0.13 
sp|Q15796|SMAD2_HUMAN  Mothers against decapentaplegic homol...    34   0.36 
sp|P84022|SMAD3_HUMAN  Mothers against decapentaplegic homol...    34   0.36 
>sp|Q9W734|SMAD6_CHICK Mothers against decapentaplegic homolog 6 (SMAD 6) (Mothers against
           DPP homolog 6) (Smad6)
          Length = 431

 Score = 40.8 bits (94), Expect = 0.004
 Identities = 34/96 (35%), Positives = 45/96 (46%)
 Frame = +1

Query: 232 HNKESKPVFISSATLQEDAFSSGKWPVVRVAAGQSILAFNTKLFANLLQSETETRPGQLP 411
           +N+   P+F++S TL  D  +     V +V  G SI  F+ +    LLQ   E      P
Sbjct: 337 YNRSEHPIFVNSPTL--DIPNCRTLIVRKVMPGYSIKVFDYEKSC-LLQHTAELDYADGP 393

Query: 412 LLRSAVIHISPQKGWGPGYKRVQFIQCPIRYEIWLS 519
              ++V  IS  KGWGP Y R     CP   EI LS
Sbjct: 394 YDPNSV-RISFAKGWGPCYSRQFITSCPCWLEILLS 428
>sp|O43541|SMAD6_HUMAN Mothers against decapentaplegic homolog 6 (SMAD 6) (Mothers against
           DPP homolog 6) (Smad6) (hSMAD6)
          Length = 496

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 33/96 (34%), Positives = 44/96 (45%)
 Frame = +1

Query: 232 HNKESKPVFISSATLQEDAFSSGKWPVVRVAAGQSILAFNTKLFANLLQSETETRPGQLP 411
           +N+   P+F++S TL  DA       V +V  G SI  F+ +     LQ   E      P
Sbjct: 403 YNRGEHPIFVNSPTL--DAPGGRALVVRKVPPGYSIKVFDFERSG--LQHAPEPDAADGP 458

Query: 412 LLRSAVIHISPQKGWGPGYKRVQFIQCPIRYEIWLS 519
              ++V  IS  KGWGP Y R     CP   EI L+
Sbjct: 459 YDPNSV-RISFAKGWGPCYSRQFITSCPCWLEILLN 493
>sp|O35182|SMAD6_MOUSE Mothers against decapentaplegic homolog 6 (SMAD 6) (Mothers against
           DPP homolog 6) (Smad6) (Mad homolog 7)
          Length = 495

 Score = 39.7 bits (91), Expect = 0.009
 Identities = 31/96 (32%), Positives = 43/96 (44%)
 Frame = +1

Query: 232 HNKESKPVFISSATLQEDAFSSGKWPVVRVAAGQSILAFNTKLFANLLQSETETRPGQLP 411
           +N+   P+F++S TL  DA       V +V  G SI  F+ +    L  ++    P    
Sbjct: 404 YNRGEHPIFVNSPTL--DAPGGRALVVRKVPPGYSIKVFDFERSGLLQHADAAHGPYDPH 461

Query: 412 LLRSAVIHISPQKGWGPGYKRVQFIQCPIRYEIWLS 519
            +R     IS  KGWGP Y R     CP   EI L+
Sbjct: 462 SVR-----ISFAKGWGPCYSRQFITSCPCWLEILLN 492
>sp|O35253|SMAD7_MOUSE Mothers against decapentaplegic homolog 7 (SMAD 7) (Mothers against
           DPP homolog 7) (Smad7) (Madh8)
          Length = 426

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 37/104 (35%), Positives = 49/104 (47%)
 Frame = +1

Query: 199 LELELSGNILLHNKESKPVFISSATLQEDAFSSGKWPVVRVAAGQSILAFNTKLFANLLQ 378
           L  E+ G + ++N+ S P+FI SATL  D   S    V +V  G SI AF+ +  A  LQ
Sbjct: 323 LTREVDG-VWVYNRSSYPIFIKSATL--DNPDSRTLLVHKVFPGFSIKAFDYEK-AYSLQ 378

Query: 379 SETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFIQCPIRYEI 510
              +    Q P      + IS  KGWG  Y R     CP   E+
Sbjct: 379 RPNDHEFMQQPWT-GFTVQISFVKGWGQCYTRQFISSCPCWLEV 421
>sp|O15105|SMAD7_HUMAN Mothers against decapentaplegic homolog 7 (SMAD 7) (Mothers against
           DPP homolog 7) (Smad7) (hSMAD7)
          Length = 426

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 37/104 (35%), Positives = 49/104 (47%)
 Frame = +1

Query: 199 LELELSGNILLHNKESKPVFISSATLQEDAFSSGKWPVVRVAAGQSILAFNTKLFANLLQ 378
           L  E+ G + ++N+ S P+FI SATL  D   S    V +V  G SI AF+ +  A  LQ
Sbjct: 323 LTREVDG-VWVYNRSSYPIFIKSATL--DNPDSRTLLVHKVFPGFSIKAFDYEK-AYSLQ 378

Query: 379 SETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFIQCPIRYEI 510
              +    Q P      + IS  KGWG  Y R     CP   E+
Sbjct: 379 RPNDHEFMQQPWT-GFTVQISFVKGWGQCYTRQFISSCPCWLEV 421
>sp|O88406|SMAD7_RAT Mothers against decapentaplegic homolog 7 (SMAD 7) (Mothers against
           DPP homolog 7) (Smad7)
          Length = 426

 Score = 38.9 bits (89), Expect = 0.015
 Identities = 37/104 (35%), Positives = 49/104 (47%)
 Frame = +1

Query: 199 LELELSGNILLHNKESKPVFISSATLQEDAFSSGKWPVVRVAAGQSILAFNTKLFANLLQ 378
           L  E+ G + ++N+ S P+FI SATL  D   S    V +V  G SI AF+ +  A  LQ
Sbjct: 323 LTREVDG-VWVYNRSSYPIFIKSATL--DNPDSRTLLVHKVFPGFSIKAFDYEK-AYSLQ 378

Query: 379 SETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFIQCPIRYEI 510
              +    Q P      + IS  KGWG  Y R     CP   E+
Sbjct: 379 RPNDHEFMQQPWT-GFTVQISFVKGWGQCYTRQFISSCPCWLEV 421
>sp|Q9JIW5|SMAD9_MOUSE Mothers against decapentaplegic homolog 9 (SMAD 9) (Mothers against
           DPP homolog 9) (Smad9) (Smad8)
          Length = 430

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 310 VVRVAAGQSILAFNTKLFANLL-QSETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFI 486
           V ++ +G S+  FN +LFA LL QS          L +   I +S  KGWG  Y R    
Sbjct: 336 VCKIPSGCSLKVFNNQLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQDVT 395

Query: 487 QCPIRYEIWL 516
             P   EI L
Sbjct: 396 STPCWIEIHL 405
>sp|O15198|SMAD9_HUMAN Mothers against decapentaplegic homolog 9 (SMAD 9) (Mothers against
           DPP homolog 9) (Smad9) (Madh6)
          Length = 467

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = +1

Query: 310 VVRVAAGQSILAFNTKLFANLL-QSETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFI 486
           V ++ +G S+  FN +LFA LL QS          L +   I +S  KGWG  Y R    
Sbjct: 373 VCKIPSGCSLKVFNNQLFAQLLAQSVHHGFEVVYELTKMCTIRMSFVKGWGAEYHRQDVT 432

Query: 487 QCPIRYEIWL 516
             P   EI L
Sbjct: 433 STPCWIEIHL 442
>sp|Q15796|SMAD2_HUMAN Mothers against decapentaplegic homolog 2 (SMAD 2) (Mothers against
           DPP homolog 2) (Mad-related protein 2) (hMAD-2) (JV18-1)
           (hSMAD2)
          Length = 467

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 310 VVRVAAGQSILAFNTKLFANLL-QSETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFI 486
           V ++  G ++  FN + FA LL QS  +       L R   I +S  KGWG  Y+R    
Sbjct: 373 VCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVT 432

Query: 487 QCPIRYEIWLS 519
             P   E+ L+
Sbjct: 433 STPCWIELHLN 443
>sp|P84022|SMAD3_HUMAN Mothers against decapentaplegic homolog 3 (SMAD 3) (Mothers against
           DPP homolog 3) (Mad3) (hMAD-3) (JV15-2) (hSMAD3)
 sp|P84025|SMAD3_RAT Mothers against decapentaplegic homolog 3 (SMAD 3) (Mothers against
           DPP homolog 3) (Mad3)
 sp|P84024|SMAD3_PIG Mothers against decapentaplegic homolog 3 (SMAD 3) (Mothers against
           DPP homolog 3) (Mad3)
 sp|Q8BUN5|SMAD3_MOUSE Mothers against decapentaplegic homolog 3 (SMAD 3) (Mothers against
           DPP homolog 3) (Mad3) (mMad3)
          Length = 425

 Score = 34.3 bits (77), Expect = 0.36
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 310 VVRVAAGQSILAFNTKLFANLL-QSETETRPGQLPLLRSAVIHISPQKGWGPGYKRVQFI 486
           V ++  G ++  FN + FA LL QS  +       L R   I +S  KGWG  Y+R    
Sbjct: 331 VCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVT 390

Query: 487 QCPIRYEIWLS 519
             P   E+ L+
Sbjct: 391 STPCWIELHLN 401
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,494,244
Number of Sequences: 369166
Number of extensions: 1800157
Number of successful extensions: 4597
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4593
length of database: 68,354,980
effective HSP length: 108
effective length of database: 48,403,600
effective search space used: 6776504000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)