Planaria EST Database


DrC_03001

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_03001
         (208 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7YJG1|MATK_ANTLI  Maturase K (Intron maturase)                 28   6.6  
sp|Q9TN87|MATK_RUSAC  Maturase K (Intron maturase)                 28   8.6  
sp|Q9TN89|MATK_BEARE  Maturase K (Intron maturase)                 28   8.6  
sp|Q9TNA1|MATK_LIRPL  Maturase K (Intron maturase)                 28   8.6  
sp|Q9TNA5|MATK_ASPEL  Maturase K (Intron maturase)                 28   8.6  
sp|Q9TNB1|MATK_CONMJ  Maturase K (Intron maturase)                 28   8.6  
sp|Q9TNB2|MATK_MAIDI  Maturase K (Intron maturase)                 28   8.6  
>sp|Q7YJG1|MATK_ANTLI Maturase K (Intron maturase)
          Length = 521

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N N+LLI H  S+ +FS
Sbjct: 172 CWIQDVPFL----HSLRFFLHEYHNWNSLLITHKKSICLFS 208
>sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase)
          Length = 520

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N+N+LLI    S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TN89|MATK_BEARE Maturase K (Intron maturase)
          Length = 520

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N+N+LLI    S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNA1|MATK_LIRPL Maturase K (Intron maturase)
          Length = 520

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N+N+LLI    S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNA5|MATK_ASPEL Maturase K (Intron maturase)
          Length = 520

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N+N+LLI    S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNB1|MATK_CONMJ Maturase K (Intron maturase)
          Length = 520

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N+N+LLI    S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNB2|MATK_MAIDI Maturase K (Intron maturase)
          Length = 520

 Score = 27.7 bits (60), Expect = 8.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
           CWI+ V F       L   ++   N+N+LLI    S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,317,950
Number of Sequences: 369166
Number of extensions: 396460
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)