Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_P17
(208 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7YJG1|MATK_ANTLI Maturase K (Intron maturase) 28 6.6
sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase) 28 8.6
sp|Q9TN89|MATK_BEARE Maturase K (Intron maturase) 28 8.6
sp|Q9TNA1|MATK_LIRPL Maturase K (Intron maturase) 28 8.6
sp|Q9TNA5|MATK_ASPEL Maturase K (Intron maturase) 28 8.6
sp|Q9TNB1|MATK_CONMJ Maturase K (Intron maturase) 28 8.6
sp|Q9TNB2|MATK_MAIDI Maturase K (Intron maturase) 28 8.6
>sp|Q7YJG1|MATK_ANTLI Maturase K (Intron maturase)
Length = 521
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N N+LLI H S+ +FS
Sbjct: 172 CWIQDVPFL----HSLRFFLHEYHNWNSLLITHKKSICLFS 208
>sp|Q9TN87|MATK_RUSAC Maturase K (Intron maturase)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N+N+LLI S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TN89|MATK_BEARE Maturase K (Intron maturase)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N+N+LLI S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNA1|MATK_LIRPL Maturase K (Intron maturase)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N+N+LLI S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNA5|MATK_ASPEL Maturase K (Intron maturase)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N+N+LLI S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNB1|MATK_CONMJ Maturase K (Intron maturase)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N+N+LLI S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
>sp|Q9TNB2|MATK_MAIDI Maturase K (Intron maturase)
Length = 520
Score = 27.7 bits (60), Expect = 8.6
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 132 CWIRTVNFR*TENKCLPILINRIQNINTLLIKHNSSLKIFS 10
CWI+ V F L ++ N+N+LLI S+ +FS
Sbjct: 174 CWIQDVPFL----HLLRFFLHEYHNLNSLLITQKKSIYVFS 210
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,317,950
Number of Sequences: 369166
Number of extensions: 396460
Number of successful extensions: 730
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 68,354,980
effective HSP length: 40
effective length of database: 60,965,580
effective search space used: 1707036240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)