Planaria EST Database


DrC_02997

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02997
         (337 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O78437|YC44_GUITH  HYPOTHETICAL 47.8 KD PROTEIN YCF44           30   1.7  
sp|Q00095|KR74_ICHV1  Gene 74 protein kinase                       28   6.6  
>sp|O78437|YC44_GUITH HYPOTHETICAL 47.8 KD PROTEIN YCF44
          Length = 414

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 113 SIFQLDWNVSIIVLNIPNFRYYLHPL 190
           +I+Q DWN+  +V+ I N  YY  PL
Sbjct: 251 TIYQTDWNIDNLVICIDNQNYYSIPL 276
>sp|Q00095|KR74_ICHV1 Gene 74 protein kinase
          Length = 673

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = +1

Query: 103 IVLEHFPVGLECINYCIKYPKFSILSSSAVGYCCSTDVD 219
           I ++H+ VG+  ++  + Y    I+ +SA+G  C   VD
Sbjct: 552 ITIDHYTVGVTNVHLYVGYITDDIVYASAIGLSCPLRVD 590
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,921,235
Number of Sequences: 369166
Number of extensions: 584535
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)