Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_O24
(337 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O78437|YC44_GUITH HYPOTHETICAL 47.8 KD PROTEIN YCF44 30 1.7
sp|Q00095|KR74_ICHV1 Gene 74 protein kinase 28 6.6
>sp|O78437|YC44_GUITH HYPOTHETICAL 47.8 KD PROTEIN YCF44
Length = 414
Score = 30.0 bits (66), Expect = 1.7
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 113 SIFQLDWNVSIIVLNIPNFRYYLHPL 190
+I+Q DWN+ +V+ I N YY PL
Sbjct: 251 TIYQTDWNIDNLVICIDNQNYYSIPL 276
>sp|Q00095|KR74_ICHV1 Gene 74 protein kinase
Length = 673
Score = 28.1 bits (61), Expect = 6.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 103 IVLEHFPVGLECINYCIKYPKFSILSSSAVGYCCSTDVD 219
I ++H+ VG+ ++ + Y I+ +SA+G C VD
Sbjct: 552 ITIDHYTVGVTNVHLYVGYITDDIVYASAIGLSCPLRVD 590
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,921,235
Number of Sequences: 369166
Number of extensions: 584535
Number of successful extensions: 955
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 955
length of database: 68,354,980
effective HSP length: 79
effective length of database: 53,760,915
effective search space used: 1720349280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)