Planaria EST Database


DrC_02991

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02991
         (618 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P07790|COTC_BACSU  Spore coat protein C                         32   1.7  
sp|Q8CGC7|SYEP_MOUSE  Bifunctional aminoacyl-tRNA synthetase...    32   1.7  
sp|O31802|YNZH_BACSU  Hypothetical protein ynzH                    30   6.5  
sp|P08575|CD45_HUMAN  Leukocyte common antigen precursor (L-...    29   8.5  
sp|P04157|CD45_RAT  Leukocyte common antigen variant 4 precu...    29   8.5  
sp|P53229|YG1V_YEAST  Hypothetical 13.6 kDa protein in RME1-...    29   8.5  
>sp|P07790|COTC_BACSU Spore coat protein C
          Length = 66

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = +1

Query: 16  YKSYMEKAYPQYKEQFKKF--YDSKDVPLPNTLKFSDVGKTHY 138
           YK Y E+ Y   K  +KK+  YD KD       K+ D  K +Y
Sbjct: 4   YKKYKEEYYTVKKTYYKKYYEYDKKDYDCDYDKKYDDYDKKYY 46
>sp|Q8CGC7|SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
            synthetase (Glutamate--tRNA ligase); Prolyl-tRNA
            synthetase (Proline--tRNA ligase)]
          Length = 1512

 Score = 31.6 bits (70), Expect = 1.7
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = +1

Query: 346  LAFPYARALAKSAFLKCYIITGLLVNFGFSYIVWRNQTEESDEEFKERRAHRLYDPFDME 525
            LA  Y++ + KS  ++ Y ++G  +   +SY +W +  +  D E K+      Y P  + 
Sbjct: 1024 LAEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVS 1083

Query: 526  RVPL 537
            +  L
Sbjct: 1084 QAAL 1087
>sp|O31802|YNZH_BACSU Hypothetical protein ynzH
          Length = 86

 Score = 29.6 bits (65), Expect = 6.5
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +1

Query: 16  YKSYMEKAYPQYKEQFKKFYDSKDVPLPNTLKFSDVGKTHY 138
           YK Y E+ Y   K  +KK+YD+ D    +  K+ D  K HY
Sbjct: 4   YKKYKEEYYTWKKTYYKKYYDN-DKKHYDCDKYYDHDKKHY 43
>sp|P08575|CD45_HUMAN Leukocyte common antigen precursor (L-CA) (CD45 antigen) (T200)
          Length = 1304

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 433  SYIVWRNQTEESDEEFKERRAHRLYDPFDMERVPLGAQL 549
            SY  WR Q   + EE K +  +    P+D  RVPL  +L
Sbjct: 951  SYRSWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHEL 989
>sp|P04157|CD45_RAT Leukocyte common antigen variant 4 precursor (L-CA) (CD45) (T200)
          Length = 1255

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 433  SYIVWRNQTEESDEEFKERRAHRLYDPFDMERVPLGAQL 549
            SY  WR Q   + EE K++       P+D  RVPL  +L
Sbjct: 904  SYRSWRTQHIGNQEENKKKNRSSNVVPYDFNRVPLKHEL 942
>sp|P53229|YG1V_YEAST Hypothetical 13.6 kDa protein in RME1-TFC4 intergenic region
          Length = 120

 Score = 29.3 bits (64), Expect = 8.5
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
 Frame = +1

Query: 274 IVIPARKIVERKPLVYPVTFTSR-------------LLAFPYARALAKSAF 387
           I    R+I+++K   +PV FTSR             LLAF YA    +SAF
Sbjct: 4   ITSKGRRILDKKIRTFPVGFTSRKVAGHVLNISPYFLLAFSYAENKGQSAF 54
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,172,892
Number of Sequences: 369166
Number of extensions: 1147622
Number of successful extensions: 2615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2613
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)