Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_O11
(618 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07790|COTC_BACSU Spore coat protein C 32 1.7
sp|Q8CGC7|SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase... 32 1.7
sp|O31802|YNZH_BACSU Hypothetical protein ynzH 30 6.5
sp|P08575|CD45_HUMAN Leukocyte common antigen precursor (L-... 29 8.5
sp|P04157|CD45_RAT Leukocyte common antigen variant 4 precu... 29 8.5
sp|P53229|YG1V_YEAST Hypothetical 13.6 kDa protein in RME1-... 29 8.5
>sp|P07790|COTC_BACSU Spore coat protein C
Length = 66
Score = 31.6 bits (70), Expect = 1.7
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +1
Query: 16 YKSYMEKAYPQYKEQFKKF--YDSKDVPLPNTLKFSDVGKTHY 138
YK Y E+ Y K +KK+ YD KD K+ D K +Y
Sbjct: 4 YKKYKEEYYTVKKTYYKKYYEYDKKDYDCDYDKKYDDYDKKYY 46
>sp|Q8CGC7|SYEP_MOUSE Bifunctional aminoacyl-tRNA synthetase [Includes: Glutamyl-tRNA
synthetase (Glutamate--tRNA ligase); Prolyl-tRNA
synthetase (Proline--tRNA ligase)]
Length = 1512
Score = 31.6 bits (70), Expect = 1.7
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +1
Query: 346 LAFPYARALAKSAFLKCYIITGLLVNFGFSYIVWRNQTEESDEEFKERRAHRLYDPFDME 525
LA Y++ + KS ++ Y ++G + +SY +W + + D E K+ Y P +
Sbjct: 1024 LAEWYSQVITKSEMIEYYDVSGCYILRPWSYSIWESIKDFFDAEIKKLGVENCYFPIFVS 1083
Query: 526 RVPL 537
+ L
Sbjct: 1084 QAAL 1087
>sp|O31802|YNZH_BACSU Hypothetical protein ynzH
Length = 86
Score = 29.6 bits (65), Expect = 6.5
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 16 YKSYMEKAYPQYKEQFKKFYDSKDVPLPNTLKFSDVGKTHY 138
YK Y E+ Y K +KK+YD+ D + K+ D K HY
Sbjct: 4 YKKYKEEYYTWKKTYYKKYYDN-DKKHYDCDKYYDHDKKHY 43
>sp|P08575|CD45_HUMAN Leukocyte common antigen precursor (L-CA) (CD45 antigen) (T200)
Length = 1304
Score = 29.3 bits (64), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 433 SYIVWRNQTEESDEEFKERRAHRLYDPFDMERVPLGAQL 549
SY WR Q + EE K + + P+D RVPL +L
Sbjct: 951 SYRSWRTQHIGNQEENKSKNRNSNVIPYDYNRVPLKHEL 989
>sp|P04157|CD45_RAT Leukocyte common antigen variant 4 precursor (L-CA) (CD45) (T200)
Length = 1255
Score = 29.3 bits (64), Expect = 8.5
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = +1
Query: 433 SYIVWRNQTEESDEEFKERRAHRLYDPFDMERVPLGAQL 549
SY WR Q + EE K++ P+D RVPL +L
Sbjct: 904 SYRSWRTQHIGNQEENKKKNRSSNVVPYDFNRVPLKHEL 942
>sp|P53229|YG1V_YEAST Hypothetical 13.6 kDa protein in RME1-TFC4 intergenic region
Length = 120
Score = 29.3 bits (64), Expect = 8.5
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 13/51 (25%)
Frame = +1
Query: 274 IVIPARKIVERKPLVYPVTFTSR-------------LLAFPYARALAKSAF 387
I R+I+++K +PV FTSR LLAF YA +SAF
Sbjct: 4 ITSKGRRILDKKIRTFPVGFTSRKVAGHVLNISPYFLLAFSYAENKGQSAF 54
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,172,892
Number of Sequences: 369166
Number of extensions: 1147622
Number of successful extensions: 2615
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2613
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)