Planaria EST Database


DrC_02989

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02989
         (299 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BBP6|NU5C_LOTJA  NAD(P)H-quinone oxidoreductase chain 5...    31   0.76 
sp|P15618|YM17_PARTE  Hypothetical 26.3 kDa protein (ORF17)        30   1.7  
sp|P61243|YCF2_PHYPA  Protein ycf2                                 30   2.2  
sp|P04540|NU5M_TRYBB  NADH-ubiquinone oxidoreductase chain 5...    30   2.2  
sp|P34019|VN02_VARV  Protein N2                                    28   4.9  
sp|P58145|ROAA_ASTLO  Ribosomal operon-associated A protein ...    28   4.9  
sp|P14544|COX1_LEITA  Cytochrome c oxidase subunit 1 (Cytoch...    28   4.9  
sp|P14357|VN02_VACCV  Protein N2                                   28   6.4  
sp|P20641|VN02_VACCC  Protein N2                                   28   6.4  
sp|Q8NGX3|O10T2_HUMAN  Olfactory receptor 10T2 (Olfactory re...    28   6.4  
>sp|Q9BBP6|NU5C_LOTJA NAD(P)H-quinone oxidoreductase chain 5, chloroplast (NAD(P)H
           dehydrogenase, chain 5) (NADH-plastoquinone
           oxidoreductase chain 5)
          Length = 747

 Score = 31.2 bits (69), Expect = 0.76
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 278 YGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNI 177
           +G  +  F+YKP+Y  +  L LLN+      KNI
Sbjct: 619 FGIFIASFFYKPVYSTLQNLNLLNLFEKNLTKNI 652
>sp|P15618|YM17_PARTE Hypothetical 26.3 kDa protein (ORF17)
          Length = 221

 Score = 30.0 bits (66), Expect = 1.7
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +2

Query: 89  SSLCSMLISCMFFVFHFNHLYV*NICNMYLCFFFFLL 199
           SSLCS+ +SC+FF+  F      +    YL   FFLL
Sbjct: 30  SSLCSLCLSCLFFILLF-----WSPSTSYLILVFFLL 61
>sp|P61243|YCF2_PHYPA Protein ycf2
          Length = 2259

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = -1

Query: 263  LLFYYKPMYGFIYFLLLLNILSTKKKKNIDTCYIYF--KHTND*NEIQRTCNLLTLNTKK 90
            L FY K     + +L L+ I S KKKK + T  + F  K  N+ + I+       L  K 
Sbjct: 1016 LNFYLKKKKSNLSYLELIKIFSIKKKKTLSTNELTFFSKILNENSNIELKIYKTFLFEKL 1075

Query: 89   MQFINIENKEHAIHIH 42
             QF    N E+ + IH
Sbjct: 1076 EQF----NNENLLFIH 1087
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
           5)
          Length = 590

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +3

Query: 3   LFKCM*IACSLFCVYMYCMFFVFNVNELHLLCVQC**VACSLYFILIICMFKIYVTCIYV 182
           +FKC       FC+ + C+F +F+     + C+       SLY  ++   F I   CI+V
Sbjct: 436 VFKC-------FCL-VDCLFLLFDYECCLVYCL------ISLYMCILSIFFIIDFVCIFV 481

Query: 183 FFFFC 197
           F  +C
Sbjct: 482 FSSYC 486
>sp|P34019|VN02_VARV Protein N2
          Length = 177

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -1

Query: 293 FLKPMYGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNID 174
           F+K + GF+ +L  YKP+Y ++   L  N+L  + K  ID
Sbjct: 132 FVKKVIGFVSILNKYKPVYSYV---LYENVLYDELKCFID 168
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
          Length = 519

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 296 VFLKPMYGFIVLLFYYKPMY-GFIYFLLLLNILSTKKKKN 180
           +FLK  Y F   L Y K  Y G   +L   N+ ++ KKKN
Sbjct: 417 IFLKYHYDFNNYLLYLKSNYSGTFSYLYTFNLYNSNKKKN 456
>sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
          Length = 549

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 27  CSLFCVYM---YCMFFV-FNVNELHLLCVQC**VACSLYFILIICMFKIYVTCIYVFFFF 194
           C+LFCV++   YC+FFV   V  L+        + C +   L++  F  ++   Y+F   
Sbjct: 471 CALFCVFLFWDYCLFFVSLFVFSLYCFFYFSTWLPCVMVLYLLLVDF-AHIVLDYLFLIL 529

Query: 195 C 197
           C
Sbjct: 530 C 530
>sp|P14357|VN02_VACCV Protein N2
          Length = 175

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 293 FLKPMYGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNIDTCYIYFKHT 147
           F+K + GF+ +L  YKP+Y ++   L  N+L  + K     C+I +  T
Sbjct: 132 FVKKVIGFVSILNKYKPVYSYV---LYENVLYDEFK-----CFINYVET 172
>sp|P20641|VN02_VACCC Protein N2
          Length = 175

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 293 FLKPMYGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNIDTCYIYFKHT 147
           F+K + GF+ +L  YKP+Y ++   L  N+L  + K     C+I +  T
Sbjct: 132 FVKKVIGFVSILNKYKPVYSYV---LYENVLYDEFK-----CFINYVET 172
>sp|Q8NGX3|O10T2_HUMAN Olfactory receptor 10T2 (Olfactory receptor OR1-3)
          Length = 314

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 284 PMYGFIVLLFYYKPMYGFIYF-LLLLNILSTKKKKNIDTC 168
           PMYGF+ +L + +  Y F+    LL+++LS  K  +   C
Sbjct: 59  PMYGFLFILSFSESCYTFVIIPQLLVHLLSDTKTISFMAC 98
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,315,828
Number of Sequences: 369166
Number of extensions: 635184
Number of successful extensions: 1677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)