Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_O07
(299 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BBP6|NU5C_LOTJA NAD(P)H-quinone oxidoreductase chain 5... 31 0.76
sp|P15618|YM17_PARTE Hypothetical 26.3 kDa protein (ORF17) 30 1.7
sp|P61243|YCF2_PHYPA Protein ycf2 30 2.2
sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5... 30 2.2
sp|P34019|VN02_VARV Protein N2 28 4.9
sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein ... 28 4.9
sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 (Cytoch... 28 4.9
sp|P14357|VN02_VACCV Protein N2 28 6.4
sp|P20641|VN02_VACCC Protein N2 28 6.4
sp|Q8NGX3|O10T2_HUMAN Olfactory receptor 10T2 (Olfactory re... 28 6.4
>sp|Q9BBP6|NU5C_LOTJA NAD(P)H-quinone oxidoreductase chain 5, chloroplast (NAD(P)H
dehydrogenase, chain 5) (NADH-plastoquinone
oxidoreductase chain 5)
Length = 747
Score = 31.2 bits (69), Expect = 0.76
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 278 YGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNI 177
+G + F+YKP+Y + L LLN+ KNI
Sbjct: 619 FGIFIASFFYKPVYSTLQNLNLLNLFEKNLTKNI 652
>sp|P15618|YM17_PARTE Hypothetical 26.3 kDa protein (ORF17)
Length = 221
Score = 30.0 bits (66), Expect = 1.7
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 89 SSLCSMLISCMFFVFHFNHLYV*NICNMYLCFFFFLL 199
SSLCS+ +SC+FF+ F + YL FFLL
Sbjct: 30 SSLCSLCLSCLFFILLF-----WSPSTSYLILVFFLL 61
>sp|P61243|YCF2_PHYPA Protein ycf2
Length = 2259
Score = 29.6 bits (65), Expect = 2.2
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = -1
Query: 263 LLFYYKPMYGFIYFLLLLNILSTKKKKNIDTCYIYF--KHTND*NEIQRTCNLLTLNTKK 90
L FY K + +L L+ I S KKKK + T + F K N+ + I+ L K
Sbjct: 1016 LNFYLKKKKSNLSYLELIKIFSIKKKKTLSTNELTFFSKILNENSNIELKIYKTFLFEKL 1075
Query: 89 MQFINIENKEHAIHIH 42
QF N E+ + IH
Sbjct: 1076 EQF----NNENLLFIH 1087
>sp|P04540|NU5M_TRYBB NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase subunit
5)
Length = 590
Score = 29.6 bits (65), Expect = 2.2
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = +3
Query: 3 LFKCM*IACSLFCVYMYCMFFVFNVNELHLLCVQC**VACSLYFILIICMFKIYVTCIYV 182
+FKC FC+ + C+F +F+ + C+ SLY ++ F I CI+V
Sbjct: 436 VFKC-------FCL-VDCLFLLFDYECCLVYCL------ISLYMCILSIFFIIDFVCIFV 481
Query: 183 FFFFC 197
F +C
Sbjct: 482 FSSYC 486
>sp|P34019|VN02_VARV Protein N2
Length = 177
Score = 28.5 bits (62), Expect = 4.9
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -1
Query: 293 FLKPMYGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNID 174
F+K + GF+ +L YKP+Y ++ L N+L + K ID
Sbjct: 132 FVKKVIGFVSILNKYKPVYSYV---LYENVLYDELKCFID 168
>sp|P58145|ROAA_ASTLO Ribosomal operon-associated A protein (RoaA)
Length = 519
Score = 28.5 bits (62), Expect = 4.9
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -1
Query: 296 VFLKPMYGFIVLLFYYKPMY-GFIYFLLLLNILSTKKKKN 180
+FLK Y F L Y K Y G +L N+ ++ KKKN
Sbjct: 417 IFLKYHYDFNNYLLYLKSNYSGTFSYLYTFNLYNSNKKKN 456
>sp|P14544|COX1_LEITA Cytochrome c oxidase subunit 1 (Cytochrome c oxidase polypeptide I)
Length = 549
Score = 28.5 bits (62), Expect = 4.9
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = +3
Query: 27 CSLFCVYM---YCMFFV-FNVNELHLLCVQC**VACSLYFILIICMFKIYVTCIYVFFFF 194
C+LFCV++ YC+FFV V L+ + C + L++ F ++ Y+F
Sbjct: 471 CALFCVFLFWDYCLFFVSLFVFSLYCFFYFSTWLPCVMVLYLLLVDF-AHIVLDYLFLIL 529
Query: 195 C 197
C
Sbjct: 530 C 530
>sp|P14357|VN02_VACCV Protein N2
Length = 175
Score = 28.1 bits (61), Expect = 6.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 293 FLKPMYGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNIDTCYIYFKHT 147
F+K + GF+ +L YKP+Y ++ L N+L + K C+I + T
Sbjct: 132 FVKKVIGFVSILNKYKPVYSYV---LYENVLYDEFK-----CFINYVET 172
>sp|P20641|VN02_VACCC Protein N2
Length = 175
Score = 28.1 bits (61), Expect = 6.4
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 293 FLKPMYGFIVLLFYYKPMYGFIYFLLLLNILSTKKKKNIDTCYIYFKHT 147
F+K + GF+ +L YKP+Y ++ L N+L + K C+I + T
Sbjct: 132 FVKKVIGFVSILNKYKPVYSYV---LYENVLYDEFK-----CFINYVET 172
>sp|Q8NGX3|O10T2_HUMAN Olfactory receptor 10T2 (Olfactory receptor OR1-3)
Length = 314
Score = 28.1 bits (61), Expect = 6.4
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -1
Query: 284 PMYGFIVLLFYYKPMYGFIYF-LLLLNILSTKKKKNIDTC 168
PMYGF+ +L + + Y F+ LL+++LS K + C
Sbjct: 59 PMYGFLFILSFSESCYTFVIIPQLLVHLLSDTKTISFMAC 98
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,315,828
Number of Sequences: 369166
Number of extensions: 635184
Number of successful extensions: 1677
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 68,354,980
effective HSP length: 69
effective length of database: 55,608,265
effective search space used: 1668247950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)