Planaria EST Database


DrC_02980

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02980
         (652 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P55809|SCOT_HUMAN  Succinyl-CoA:3-ketoacid-coenzyme A tra...   122   6e-28
sp|Q29551|SCOT_PIG  Succinyl-CoA:3-ketoacid-coenzyme A trans...   121   2e-27
sp|Q9D0K2|SCOT_MOUSE  Succinyl-CoA:3-ketoacid-coenzyme A tra...   120   2e-27
sp|P63651|SCOB_MYCBO  Probable succinyl-CoA:3-ketoacid-coenz...   117   2e-26
sp|Q9BYC2|SCOT2_HUMAN  Succinyl-CoA:3-ketoacid-coenzyme A tr...   114   3e-25
sp|O34263|SCOB_XANCP  Succinyl-CoA:3-ketoacid-coenzyme A tra...   112   1e-24
sp|P56007|SCOB_HELPY  Succinyl-CoA:3-ketoacid-coenzyme A tra...   112   1e-24
sp|P42316|SCOB_BACSU  Probable succinyl-CoA:3-ketoacid-coenz...   111   1e-24
sp|Q9ZLE4|SCOB_HELPJ  Succinyl-CoA:3-ketoacid-coenzyme A tra...   111   2e-24
sp|Q09450|SCOT_CAEEL  Probable succinyl-CoA:3-ketoacid-coenz...   108   2e-23
>sp|P55809|SCOT_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  122 bits (307), Expect = 6e-28
 Identities = 55/102 (53%), Positives = 78/102 (76%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GKM+KGMGGAMDLVS++ TKV++  EH A   + KI+ +C+LPLTG QCVN I+TEK VF
Sbjct: 417 GKMVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVF 476

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETTGCEFQLAEKVLPMQQI 553
           +V    GL L E+ EG+ + ++ ++TGC+F ++ K++PMQQI
Sbjct: 477 DVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 518

 Score =  114 bits (284), Expect = 3e-25
 Identities = 53/82 (64%), Positives = 65/82 (79%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A+E + GMY NLGIG+P      I  ++ V LQSENG+LG+GPYP +++ DADLINAGKE
Sbjct: 310 ALEFEDGMYANLGIGIPLLASNFISPNITVHLQSENGVLGLGPYPRQHEADADLINAGKE 369

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           TVT+LPG S+FSSD SFAMIRG
Sbjct: 370 TVTILPGASFFSSDESFAMIRG 391
>sp|Q29551|SCOT_PIG Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  121 bits (303), Expect = 2e-27
 Identities = 58/82 (70%), Positives = 67/82 (81%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A+E + GMY NLGIG+P      I  ++ V LQSENGILG+GPYPL+N+VDADLINAGKE
Sbjct: 310 ALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGILGLGPYPLQNEVDADLINAGKE 369

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           TVT+LPG SYFSSD SFAMIRG
Sbjct: 370 TVTVLPGASYFSSDESFAMIRG 391

 Score =  121 bits (303), Expect = 2e-27
 Identities = 54/102 (52%), Positives = 78/102 (76%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GK++KGMGGAMDLVS++ TKV++  EH A   + KI+ +C+LPLTG QCVN I+TEK VF
Sbjct: 417 GKLVKGMGGAMDLVSSAKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKAVF 476

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETTGCEFQLAEKVLPMQQI 553
           +V    GL L E+ EG+ + +I ++TGC+F ++ K++PMQQ+
Sbjct: 477 DVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQV 518
>sp|Q9D0K2|SCOT_MOUSE Succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial
           precursor (Somatic-type succinyl CoA:3-oxoacid
           CoA-transferase) (Scot-S)
          Length = 520

 Score =  120 bits (302), Expect = 2e-27
 Identities = 56/102 (54%), Positives = 77/102 (75%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GKM+KGMGGAMDLVS+S TKV++  EH A   + KI+ +C+LPLTG QCVN I+TEK VF
Sbjct: 417 GKMVKGMGGAMDLVSSSKTKVVVTMEHSAKGNAHKIMEKCTLPLTGKQCVNRIITEKGVF 476

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETTGCEFQLAEKVLPMQQI 553
           +V    GL L E+ EG+ + +I ++TGC+F ++  ++PMQQI
Sbjct: 477 DVDKKNGLTLIELWEGLTVDDIKKSTGCDFAVSPNLMPMQQI 518

 Score =  115 bits (288), Expect = 1e-25
 Identities = 54/82 (65%), Positives = 66/82 (80%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A+E + GMY NLGIG+P      I  ++ V LQSENG+LG+GPYPL+++ DADLINAGKE
Sbjct: 310 ALEFEDGMYANLGIGIPLLASNFISPNMTVHLQSENGVLGLGPYPLKDEADADLINAGKE 369

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           TVT+LPG S+FSSD SFAMIRG
Sbjct: 370 TVTVLPGASFFSSDESFAMIRG 391
>sp|P63651|SCOB_MYCBO Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
 sp|P63650|SCOB_MYCTU Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 218

 Score =  117 bits (294), Expect = 2e-26
 Identities = 55/82 (67%), Positives = 63/82 (76%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A E + G YVNLGIGMPT +P HIP  ++V L SENGILG+GPYP    VDADLINAGKE
Sbjct: 16  AAEFEDGQYVNLGIGMPTLIPNHIPDGVHVVLHSENGILGVGPYPRREDVDADLINAGKE 75

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           TVT LPG ++FSS  SF +IRG
Sbjct: 76  TVTTLPGAAFFSSSTSFGIIRG 97

 Score = 92.8 bits (229), Expect = 7e-19
 Identities = 49/86 (56%), Positives = 60/86 (69%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GKM+KGMGGAMDLV     KVI+  EH A DGSPKI+ +C+LPLTGV CV+ IVTE  V 
Sbjct: 123 GKMVKGMGGAMDLVH-GARKVIVMMEHTAKDGSPKILERCTLPLTGVGCVDRIVTELAVI 181

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETT 505
           +V  D GL L + A G+ + E+V  T
Sbjct: 182 DVCAD-GLHLVQTAPGVSVDEVVAKT 206
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid-coenzyme A transferase 2, mitochondrial
           precursor (Testis-specific succinyl CoA:3-oxoacid
           CoA-transferase) (SCOT-t)
          Length = 517

 Score =  114 bits (284), Expect = 3e-25
 Identities = 49/102 (48%), Positives = 74/102 (72%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GK +KGMGGAMDLVS+  T+V++  +HC  D +PKI+ +C++PLTG +CV+ I+TEK VF
Sbjct: 414 GKKVKGMGGAMDLVSSQKTRVVVTMQHCTKDNTPKIMEKCTMPLTGKRCVDRIITEKAVF 473

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETTGCEFQLAEKVLPMQQI 553
           +V     L L E+ EG+ + +I ++TGC F ++  + PMQQ+
Sbjct: 474 DVHRKKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQV 515

 Score =  111 bits (278), Expect = 1e-24
 Identities = 52/82 (63%), Positives = 65/82 (79%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A+E + GMY NLGIG+P      I   + V L SENGILG+GP+P E++VDADLINAGK+
Sbjct: 307 ALEFEDGMYANLGIGIPLLASNFISPSMTVHLHSENGILGLGPFPTEDEVDADLINAGKQ 366

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           TVT+LPGG +F+SD+SFAMIRG
Sbjct: 367 TVTVLPGGCFFASDDSFAMIRG 388
>sp|O34263|SCOB_XANCP Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 213

 Score =  112 bits (279), Expect = 1e-24
 Identities = 55/82 (67%), Positives = 65/82 (79%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A EL  G YVNLGIG+PT +  HIP  ++V LQSENG+LGIGP+P E++VDADLINAGK+
Sbjct: 13  ARELTDGAYVNLGIGLPTLVANHIPDGVDVWLQSENGLLGIGPFPGEDEVDADLINAGKQ 72

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           TVT   G SYF S +SFAMIRG
Sbjct: 73  TVTARSGASYFGSHDSFAMIRG 94

 Score = 90.5 bits (223), Expect = 3e-18
 Identities = 50/91 (54%), Positives = 64/91 (70%), Gaps = 1/91 (1%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTK-VIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCV 424
           GKM+KGMGGAMDLV+  G K V++  EH A DG+ KI+ QC LPLTGV  V+ I+T+  V
Sbjct: 120 GKMVKGMGGAMDLVA--GVKRVVVLMEHVAKDGTHKILPQCDLPLTGVGVVDRIITDLAV 177

Query: 425 FEVKPDVGLVLTEIAEGIDIQEIVETTGCEF 517
           F+V  D GLVL E AEG+ ++E+   TG  F
Sbjct: 178 FDV-TDGGLVLVEAAEGVGLEELRAKTGVAF 207
>sp|P56007|SCOB_HELPY Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 207

 Score =  112 bits (279), Expect = 1e-24
 Identities = 54/82 (65%), Positives = 66/82 (80%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A ELK GMYVNLGIG+PT +   +   +N+  QSENG+LGIG YPLE  VDADLINAGKE
Sbjct: 10  AKELKEGMYVNLGIGLPTLVANEV-SGMNIVFQSENGLLGIGAYPLEGSVDADLINAGKE 68

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           T+T++PG S+F+S +SFAMIRG
Sbjct: 69  TITVVPGASFFNSADSFAMIRG 90

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 40/91 (43%), Positives = 57/91 (62%)
 Frame = +2

Query: 251 KMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVFE 430
           K+IKGMGGAMDLV     KVI+  EHC   G  K+  +CSLPLTG   V+ ++T+  VFE
Sbjct: 117 KLIKGMGGAMDLVH-GAKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVFE 175

Query: 431 VKPDVGLVLTEIAEGIDIQEIVETTGCEFQL 523
              +  + L E+ EG+ + ++ E T  EF++
Sbjct: 176 FSNN-AMKLVELQEGVSLDQVKEKTEAEFEV 205
>sp|P42316|SCOB_BACSU Probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B
           (Succinyl CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 216

 Score =  111 bits (278), Expect = 1e-24
 Identities = 55/80 (68%), Positives = 62/80 (77%)
 Frame = +3

Query: 9   ELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKETV 188
           E+K GM VNLGIGMPT +   IP  ++V LQSENG+LGIGPYPLE   DADLINAGKET+
Sbjct: 15  EIKDGMNVNLGIGMPTLVANEIPDGVHVMLQSENGLLGIGPYPLEGTEDADLINAGKETI 74

Query: 189 TLLPGGSYFSSDNSFAMIRG 248
           T + G SYF S  SFAMIRG
Sbjct: 75  TEVTGASYFDSAESFAMIRG 94

 Score = 80.1 bits (196), Expect = 5e-15
 Identities = 39/97 (40%), Positives = 63/97 (64%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GKM+KGMGGAMDLV+    ++++  EH    G  K+   CSLPLTG + V+ ++T+  VF
Sbjct: 120 GKMVKGMGGAMDLVN-GAKRIVVIMEHVNKHGESKVKKTCSLPLTGQKVVHRLITDLAVF 178

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETTGCEFQLAEKVL 538
           +   +  + LTE+ +G+ I+E+ E T  +F +++ VL
Sbjct: 179 DF-VNGRMTLTELQDGVTIEEVYEKTEADFAVSQSVL 214
>sp|Q9ZLE4|SCOB_HELPJ Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (Succinyl
           CoA:3-oxoacid CoA-transferase) (OXCT B)
          Length = 207

 Score =  111 bits (277), Expect = 2e-24
 Identities = 54/82 (65%), Positives = 66/82 (80%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A ELK GMYVNLGIG+PT +   +   +N+  QSENG+LGIG YPLE  VDADLINAGKE
Sbjct: 10  AKELKEGMYVNLGIGLPTLVANEV-SGMNIVFQSENGLLGIGAYPLEGGVDADLINAGKE 68

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
           T+T++PG S+F+S +SFAMIRG
Sbjct: 69  TITVVPGASFFNSADSFAMIRG 90

 Score = 78.2 bits (191), Expect = 2e-14
 Identities = 40/91 (43%), Positives = 57/91 (62%)
 Frame = +2

Query: 251 KMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVFE 430
           K+IKGMGGAMDLV     KVI+  EHC   G  K+  +CSLPLTG   V+ ++T+  VFE
Sbjct: 117 KLIKGMGGAMDLVH-GAKKVIVIMEHCNKYGESKVKKECSLPLTGKGVVHQLITDLAVFE 175

Query: 431 VKPDVGLVLTEIAEGIDIQEIVETTGCEFQL 523
              +  + L E+ EG+ + ++ E T  EF++
Sbjct: 176 FSNN-AMELVELQEGVSLDQVKEKTEAEFEV 205
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid-coenzyme A transferase,
           mitochondrial precursor (3-oxoacid CoA-transferase)
          Length = 521

 Score =  108 bits (269), Expect = 2e-23
 Identities = 52/82 (63%), Positives = 59/82 (71%)
 Frame = +3

Query: 3   AIELKSGMYVNLGIGMPTQLPQHIPKDLNVTLQSENGILGIGPYPLENQVDADLINAGKE 182
           A+E   GMY NLGIG+PT  P +IP    V LQSENGI+G+GPYP +   DADLINAGKE
Sbjct: 308 ALEFTDGMYANLGIGIPTLAPNYIPNGFTVHLQSENGIIGVGPYPRKGTEDADLINAGKE 367

Query: 183 TVTLLPGGSYFSSDNSFAMIRG 248
            +TLL G S   SD SFAMIRG
Sbjct: 368 PITLLKGASIVGSDESFAMIRG 389

 Score =  105 bits (262), Expect = 1e-22
 Identities = 47/105 (44%), Positives = 70/105 (66%)
 Frame = +2

Query: 248 GKMIKGMGGAMDLVSTSGTKVIIATEHCASDGSPKIVNQCSLPLTGVQCVNTIVTEKCVF 427
           GK++KGMGGAMDLVS  G +VI+  EH + +G PKI+  C LPLTG   ++ I+T+  VF
Sbjct: 415 GKLVKGMGGAMDLVSAPGARVIVVMEHVSKNGEPKILEHCELPLTGKGVISRIITDMAVF 474

Query: 428 EVKPDVGLVLTEIAEGIDIQEIVETTGCEFQLAEKVLPMQQIDLN 562
           +V    GL L E+ + + + +I + T C+F+++E + PM Q  LN
Sbjct: 475 DVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMGQAPLN 519
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,698,339
Number of Sequences: 369166
Number of extensions: 1472929
Number of successful extensions: 3491
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3474
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5365037700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)