Planaria EST Database


DrC_02957

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02957
         (375 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P60517|GBRAP_RAT  Gamma-aminobutyric acid receptor associ...   138   3e-33
sp|Q09490|LGG1_CAEEL  Protein lgg-1                               135   4e-32
sp|Q8R3R8|GBRL1_MOUSE  Gamma-aminobutyric acid receptor-asso...   132   2e-31
sp|Q8HYB6|GBRL1_BOVIN  Gamma-aminobutyric acid receptor-asso...   131   5e-31
sp|Q5RF21|GBRL1_PONPY  Gamma-aminobutyric acid receptor-asso...   129   2e-30
sp|Q9BY60|GBRL3_HUMAN  Gamma-aminobutyric acid receptor-asso...   122   3e-28
sp|P87068|ATG8_LACBI  Autophagy-related protein 8 precursor ...   102   4e-22
sp|Q6C794|ATG8_YARLI  Autophagy-related protein 8 precursor ...   100   8e-22
sp|Q5QFG1|ATG8_PICAN  Autophagy-related protein 8 precursor ...    99   2e-21
sp|Q6BT31|ATG8_DEBHA  Autophagy-related protein 8 precursor ...    99   2e-21
>sp|P60517|GBRAP_RAT Gamma-aminobutyric acid receptor associated protein (GABA(A)
           receptor-associated protein)
 sp|Q8MK68|GBRAP_RABIT Gamma-aminobutyric acid receptor associated protein (GABA(A)
           receptor-associated protein)
 sp|Q9DCD6|GBRAP_MOUSE Gamma-aminobutyric acid receptor associated protein (GABA(A)
           receptor-associated protein)
 sp|O95166|GBRAP_HUMAN Gamma-aminobutyric acid receptor associated protein (GABA(A)
           receptor-associated protein) (MM46)
          Length = 117

 Score =  138 bits (348), Expect = 3e-33
 Identities = 65/73 (89%), Positives = 69/73 (94%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           LDKKKYLVP+DLTVGQFYFLIRKRI LR+EDALFFFVNNVIPPTS TMG LY+EHHEED 
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 103

Query: 181 FLYVAYSDESVYG 219
           FLY+AYSDESVYG
Sbjct: 104 FLYIAYSDESVYG 116
>sp|Q09490|LGG1_CAEEL Protein lgg-1
          Length = 123

 Score =  135 bits (339), Expect = 4e-32
 Identities = 64/73 (87%), Positives = 68/73 (93%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           LDKKKYLVP+DLTVGQFYFLIRKRIQLR EDALFFFVNNVIP T  TMG LY++HHEEDL
Sbjct: 44  LDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDL 103

Query: 181 FLYVAYSDESVYG 219
           FLY+AYSDESVYG
Sbjct: 104 FLYIAYSDESVYG 116
>sp|Q8R3R8|GBRL1_MOUSE Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
           receptor-associated protein-like 1) (Glandular
           epithelial cell protein 1) (GEC-1)
 sp|Q9H0R8|GBRL1_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
           receptor-associated protein-like 1) (Glandular
           epithelial cell protein 1) (GEC-1) (Early
           estrogen-regulated protein)
 sp|P60518|GRL1_CAVPO Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
           receptor-associated protein-like 1) (Glandular
           epithelial cell protein 1)
          Length = 117

 Score =  132 bits (332), Expect = 2e-31
 Identities = 63/73 (86%), Positives = 67/73 (91%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           LDK+KYLVP+DLTVGQFYFLIRKRI LR EDALFFFVNN IPPTS TMG LYE++HEED 
Sbjct: 44  LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDY 103

Query: 181 FLYVAYSDESVYG 219
           FLYVAYSDESVYG
Sbjct: 104 FLYVAYSDESVYG 116
>sp|Q8HYB6|GBRL1_BOVIN Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
           receptor-associated protein-like 1)
          Length = 111

 Score =  131 bits (329), Expect = 5e-31
 Identities = 62/74 (83%), Positives = 67/74 (90%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           LDK+KYLVP+DLTVGQFYFLIRKRI LR EDALFFFVNN IPPTS TMG LYE++HEED 
Sbjct: 37  LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDY 96

Query: 181 FLYVAYSDESVYGA 222
           FLYVAYSDES YG+
Sbjct: 97  FLYVAYSDESTYGS 110
>sp|Q5RF21|GBRL1_PONPY Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
           receptor-associated protein-like 1)
          Length = 117

 Score =  129 bits (324), Expect = 2e-30
 Identities = 62/73 (84%), Positives = 66/73 (90%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           LDK+KYLVP+DLTVGQFYFLIRKRI LR EDALFFFVNN IPPTS TMG LYE++ EED 
Sbjct: 44  LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDY 103

Query: 181 FLYVAYSDESVYG 219
           FLYVAYSDESVYG
Sbjct: 104 FLYVAYSDESVYG 116
>sp|Q9BY60|GBRL3_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 3 (GABA(A)
           receptor-associated protein-like 3)
          Length = 117

 Score =  122 bits (306), Expect = 3e-28
 Identities = 59/73 (80%), Positives = 64/73 (87%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           LD++KYLVP+DLT GQFY LIRKRI LR EDALFFFVNN IPPTS TMG LYE+ HEED 
Sbjct: 44  LDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDD 103

Query: 181 FLYVAYSDESVYG 219
           FLYVAYS+ESVYG
Sbjct: 104 FLYVAYSNESVYG 116
>sp|P87068|ATG8_LACBI Autophagy-related protein 8 precursor (Autophagy-related
           ubiquitin-like modifier ATG8)
          Length = 184

 Score =  102 bits (253), Expect = 4e-22
 Identities = 46/73 (63%), Positives = 60/73 (82%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           +DKKKYLVP+DLTVGQF ++IRKRI+L  E A+F FV+ V+PPT+  M A+YEEH +ED 
Sbjct: 44  IDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDN 103

Query: 181 FLYVAYSDESVYG 219
           FLYV+YS E+ +G
Sbjct: 104 FLYVSYSGENTFG 116
>sp|Q6C794|ATG8_YARLI Autophagy-related protein 8 precursor (Autophagy-related
           ubiquitin-like modifier ATG8)
          Length = 137

 Score =  100 bits (250), Expect = 8e-22
 Identities = 46/73 (63%), Positives = 60/73 (82%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           +DKKKYLVP DLTVGQF ++IRKRI+L SE A+F FV++V+PPT+  M ++YEEH +ED 
Sbjct: 57  IDKKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEHKDEDG 116

Query: 181 FLYVAYSDESVYG 219
           FLYV YS E+ +G
Sbjct: 117 FLYVTYSGENTFG 129
>sp|Q5QFG1|ATG8_PICAN Autophagy-related protein 8 precursor (Autophagy-related
           ubiquitin-like modifier ATG8)
          Length = 125

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 43/73 (58%), Positives = 60/73 (82%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           +DK+KYLVP+DLTVGQF ++IRKRIQL SE A+F FVN+++PPT+  M  +YE++ +ED 
Sbjct: 44  IDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDG 103

Query: 181 FLYVAYSDESVYG 219
           FLY+ YS E+ +G
Sbjct: 104 FLYILYSGENTFG 116
>sp|Q6BT31|ATG8_DEBHA Autophagy-related protein 8 precursor (Autophagy-related
           ubiquitin-like modifier ATG8)
          Length = 136

 Score = 99.4 bits (246), Expect = 2e-21
 Identities = 43/73 (58%), Positives = 59/73 (80%)
 Frame = +1

Query: 1   LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
           +DK+KYLVP DL+VGQF ++IRKRI+L SE A+F F+N+++PPT+  M  +YEEH +ED 
Sbjct: 44  IDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDG 103

Query: 181 FLYVAYSDESVYG 219
           FLYV YS E+ +G
Sbjct: 104 FLYVLYSGENTFG 116
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,335,939
Number of Sequences: 369166
Number of extensions: 631108
Number of successful extensions: 1184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)