Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_H17
(375 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P60517|GBRAP_RAT Gamma-aminobutyric acid receptor associ... 138 3e-33
sp|Q09490|LGG1_CAEEL Protein lgg-1 135 4e-32
sp|Q8R3R8|GBRL1_MOUSE Gamma-aminobutyric acid receptor-asso... 132 2e-31
sp|Q8HYB6|GBRL1_BOVIN Gamma-aminobutyric acid receptor-asso... 131 5e-31
sp|Q5RF21|GBRL1_PONPY Gamma-aminobutyric acid receptor-asso... 129 2e-30
sp|Q9BY60|GBRL3_HUMAN Gamma-aminobutyric acid receptor-asso... 122 3e-28
sp|P87068|ATG8_LACBI Autophagy-related protein 8 precursor ... 102 4e-22
sp|Q6C794|ATG8_YARLI Autophagy-related protein 8 precursor ... 100 8e-22
sp|Q5QFG1|ATG8_PICAN Autophagy-related protein 8 precursor ... 99 2e-21
sp|Q6BT31|ATG8_DEBHA Autophagy-related protein 8 precursor ... 99 2e-21
>sp|P60517|GBRAP_RAT Gamma-aminobutyric acid receptor associated protein (GABA(A)
receptor-associated protein)
sp|Q8MK68|GBRAP_RABIT Gamma-aminobutyric acid receptor associated protein (GABA(A)
receptor-associated protein)
sp|Q9DCD6|GBRAP_MOUSE Gamma-aminobutyric acid receptor associated protein (GABA(A)
receptor-associated protein)
sp|O95166|GBRAP_HUMAN Gamma-aminobutyric acid receptor associated protein (GABA(A)
receptor-associated protein) (MM46)
Length = 117
Score = 138 bits (348), Expect = 3e-33
Identities = 65/73 (89%), Positives = 69/73 (94%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
LDKKKYLVP+DLTVGQFYFLIRKRI LR+EDALFFFVNNVIPPTS TMG LY+EHHEED
Sbjct: 44 LDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFFFVNNVIPPTSATMGQLYQEHHEEDF 103
Query: 181 FLYVAYSDESVYG 219
FLY+AYSDESVYG
Sbjct: 104 FLYIAYSDESVYG 116
>sp|Q09490|LGG1_CAEEL Protein lgg-1
Length = 123
Score = 135 bits (339), Expect = 4e-32
Identities = 64/73 (87%), Positives = 68/73 (93%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
LDKKKYLVP+DLTVGQFYFLIRKRIQLR EDALFFFVNNVIP T TMG LY++HHEEDL
Sbjct: 44 LDKKKYLVPSDLTVGQFYFLIRKRIQLRPEDALFFFVNNVIPQTMTTMGQLYQDHHEEDL 103
Query: 181 FLYVAYSDESVYG 219
FLY+AYSDESVYG
Sbjct: 104 FLYIAYSDESVYG 116
>sp|Q8R3R8|GBRL1_MOUSE Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
receptor-associated protein-like 1) (Glandular
epithelial cell protein 1) (GEC-1)
sp|Q9H0R8|GBRL1_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
receptor-associated protein-like 1) (Glandular
epithelial cell protein 1) (GEC-1) (Early
estrogen-regulated protein)
sp|P60518|GRL1_CAVPO Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
receptor-associated protein-like 1) (Glandular
epithelial cell protein 1)
Length = 117
Score = 132 bits (332), Expect = 2e-31
Identities = 63/73 (86%), Positives = 67/73 (91%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
LDK+KYLVP+DLTVGQFYFLIRKRI LR EDALFFFVNN IPPTS TMG LYE++HEED
Sbjct: 44 LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDY 103
Query: 181 FLYVAYSDESVYG 219
FLYVAYSDESVYG
Sbjct: 104 FLYVAYSDESVYG 116
>sp|Q8HYB6|GBRL1_BOVIN Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
receptor-associated protein-like 1)
Length = 111
Score = 131 bits (329), Expect = 5e-31
Identities = 62/74 (83%), Positives = 67/74 (90%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
LDK+KYLVP+DLTVGQFYFLIRKRI LR EDALFFFVNN IPPTS TMG LYE++HEED
Sbjct: 37 LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNHEEDY 96
Query: 181 FLYVAYSDESVYGA 222
FLYVAYSDES YG+
Sbjct: 97 FLYVAYSDESTYGS 110
>sp|Q5RF21|GBRL1_PONPY Gamma-aminobutyric acid receptor-associated protein-like 1 (GABA(A)
receptor-associated protein-like 1)
Length = 117
Score = 129 bits (324), Expect = 2e-30
Identities = 62/73 (84%), Positives = 66/73 (90%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
LDK+KYLVP+DLTVGQFYFLIRKRI LR EDALFFFVNN IPPTS TMG LYE++ EED
Sbjct: 44 LDKRKYLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDNREEDY 103
Query: 181 FLYVAYSDESVYG 219
FLYVAYSDESVYG
Sbjct: 104 FLYVAYSDESVYG 116
>sp|Q9BY60|GBRL3_HUMAN Gamma-aminobutyric acid receptor-associated protein-like 3 (GABA(A)
receptor-associated protein-like 3)
Length = 117
Score = 122 bits (306), Expect = 3e-28
Identities = 59/73 (80%), Positives = 64/73 (87%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
LD++KYLVP+DLT GQFY LIRKRI LR EDALFFFVNN IPPTS TMG LYE+ HEED
Sbjct: 44 LDRRKYLVPSDLTDGQFYLLIRKRIHLRPEDALFFFVNNTIPPTSATMGQLYEDSHEEDD 103
Query: 181 FLYVAYSDESVYG 219
FLYVAYS+ESVYG
Sbjct: 104 FLYVAYSNESVYG 116
>sp|P87068|ATG8_LACBI Autophagy-related protein 8 precursor (Autophagy-related
ubiquitin-like modifier ATG8)
Length = 184
Score = 102 bits (253), Expect = 4e-22
Identities = 46/73 (63%), Positives = 60/73 (82%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
+DKKKYLVP+DLTVGQF ++IRKRI+L E A+F FV+ V+PPT+ M A+YEEH +ED
Sbjct: 44 IDKKKYLVPSDLTVGQFVYVIRKRIKLAPEKAIFIFVDEVLPPTAALMSAIYEEHKDEDN 103
Query: 181 FLYVAYSDESVYG 219
FLYV+YS E+ +G
Sbjct: 104 FLYVSYSGENTFG 116
>sp|Q6C794|ATG8_YARLI Autophagy-related protein 8 precursor (Autophagy-related
ubiquitin-like modifier ATG8)
Length = 137
Score = 100 bits (250), Expect = 8e-22
Identities = 46/73 (63%), Positives = 60/73 (82%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
+DKKKYLVP DLTVGQF ++IRKRI+L SE A+F FV++V+PPT+ M ++YEEH +ED
Sbjct: 57 IDKKKYLVPADLTVGQFVYVIRKRIKLSSERAIFIFVDDVLPPTAALMSSIYEEHKDEDG 116
Query: 181 FLYVAYSDESVYG 219
FLYV YS E+ +G
Sbjct: 117 FLYVTYSGENTFG 129
>sp|Q5QFG1|ATG8_PICAN Autophagy-related protein 8 precursor (Autophagy-related
ubiquitin-like modifier ATG8)
Length = 125
Score = 99.4 bits (246), Expect = 2e-21
Identities = 43/73 (58%), Positives = 60/73 (82%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
+DK+KYLVP+DLTVGQF ++IRKRIQL SE A+F FVN+++PPT+ M +YE++ +ED
Sbjct: 44 IDKRKYLVPSDLTVGQFVYVIRKRIQLPSEKAIFIFVNDILPPTASLMSTIYEQYKDEDG 103
Query: 181 FLYVAYSDESVYG 219
FLY+ YS E+ +G
Sbjct: 104 FLYILYSGENTFG 116
>sp|Q6BT31|ATG8_DEBHA Autophagy-related protein 8 precursor (Autophagy-related
ubiquitin-like modifier ATG8)
Length = 136
Score = 99.4 bits (246), Expect = 2e-21
Identities = 43/73 (58%), Positives = 59/73 (80%)
Frame = +1
Query: 1 LDKKKYLVPNDLTVGQFYFLIRKRIQLRSEDALFFFVNNVIPPTSFTMGALYEEHHEEDL 180
+DK+KYLVP DL+VGQF ++IRKRI+L SE A+F F+N+++PPT+ M +YEEH +ED
Sbjct: 44 IDKRKYLVPGDLSVGQFVYVIRKRIKLPSEKAIFIFINDILPPTAALMSTIYEEHKDEDG 103
Query: 181 FLYVAYSDESVYG 219
FLYV YS E+ +G
Sbjct: 104 FLYVLYSGENTFG 116
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,335,939
Number of Sequences: 369166
Number of extensions: 631108
Number of successful extensions: 1184
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1178
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)