Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DrC_02956
(862 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O17847|SRA25_CAEEL Serpentine receptor class alpha-25 (P... 37 0.054
sp|Q46089|FTSK_CAMJE DNA translocase ftsK 35 0.35
sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ... 34 0.46
sp|Q90069|POLG_SBMVG Genome polyprotein [Contains: P1 prote... 34 0.46
sp|P21231|POLG_SBMVN Genome polyprotein [Contains: P1 prote... 34 0.46
sp|Q9NVL8|CN105_HUMAN Protein C14orf105 34 0.60
sp|O66709|Y388_AQUAE Hypothetical protein AQ_388 34 0.60
sp|P97577|FEZ1_RAT Fasciculation and elongation protein zet... 33 0.78
sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1 33 1.0
sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing... 33 1.3
>sp|O17847|SRA25_CAEEL Serpentine receptor class alpha-25 (Protein sra-25)
Length = 335
Score = 37.4 bits (85), Expect = 0.054
Identities = 39/139 (28%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Frame = -1
Query: 829 IRNNILNN--------VIFSSQHHMNRNI---LHQYHYN*RFSKD--SFRFHFDEKTYSF 689
+RNNI +N + +S H + +HQ + + ++ D S FHF E
Sbjct: 50 LRNNIFSNSTQRILLVCLVNSVFHQAATLEIRIHQVYRSFVYASDPCSLLFHFTE----- 104
Query: 688 F*NCFPVIFHYQMMNYFSIF*--------LIHHIQSFDFFQYHYFV---YLIIVQN*SFS 542
C ++ Y + NYFS + LI H +F FV LII SF
Sbjct: 105 ---CEVELYFYYLTNYFSTYSVFSLTFDRLISHYNPRFYFSQQNFVSNTLLIIQCLLSFG 161
Query: 541 VYYVNIVLVPKFS*TFNCF 485
YYV + VP F C+
Sbjct: 162 TYYVGLYGVPPFGYVSICY 180
>sp|Q46089|FTSK_CAMJE DNA translocase ftsK
Length = 946
Score = 34.7 bits (78), Expect = 0.35
Identities = 34/139 (24%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Frame = +1
Query: 214 ENEINKEPKSVAYDLKINDGDRIRTDVESIIKKPMPNRLRHLEPLQN----PPLLTREKL 381
E E++ P+ K+ D +I D + +P R P+ N P + T+E
Sbjct: 260 EEEVDMIPERFLKPKKLEDIKQI--DTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELE 317
Query: 382 IRKLKSAEEKRKQMFIK*EKEILLS*YSSILFKTQNN*MFKK--ILELKRYSHSRPKTIS 555
+R+ +EK +Q + + EIL + + K + I+E +YS + PKTI
Sbjct: 318 LRENLIKKEKLEQEYKAYQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIK 377
Query: 556 SEQLLNTQNNDIGKNQNFE 612
+E +++ I +N+N +
Sbjct: 378 TE---TEESDKINENKNLD 393
>sp|P62135|RAD50_NANEQ DNA double-strand break repair rad50 ATPase
Length = 786
Score = 34.3 bits (77), Expect = 0.46
Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 30/165 (18%)
Frame = +1
Query: 67 KNNSANVPTKIIEKSK---TVISISNEHLSTCSSIKEEIETLLK--------DSGLPVSV 213
K N + + +EK K V+ +HL T + +EI+ +++ D +P
Sbjct: 443 KYNQLLIKIRALEKYKGLEKVLEAKTKHLETIENRLKEIKPIIELEIPKIELDESIPYKY 502
Query: 214 ENEINK----EPK----------SVAYDLKINDGDRIRTDVESIIKKPMPNR-----LRH 336
+ +NK E K YD+ I + RI IKKP R L+
Sbjct: 503 KQLLNKVSYLEAKIKEYERYKNIECPYDIAIEELKRIEDKYNKYIKKPALERELNLLLKE 562
Query: 337 LEPLQNPPLLTREKLIRKLKSAEEKRKQMFIK*EKEILLS*YSSI 471
LE N L +E+++ KL E + + K +KE LLS S +
Sbjct: 563 LE-RYNSLLKEKEEILSKLNPEIETKYKELTK-KKENLLSEISKV 605
>sp|Q90069|POLG_SBMVG Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3066
Score = 34.3 bits (77), Expect = 0.46
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 70 NNSANVPTKIIEKSKTVISISNEHLSTCSSIKEEIETLLKDSGLPVSVENEINKEPKSVA 249
N ++ K++ K K S E + S +EI+++ +D L + + E NKE SV+
Sbjct: 1137 NERSDAVFKVLSKLKAFFSTMGEDVKVQSL--DEIQSIDEDKKLTIDFDLETNKESSSVS 1194
Query: 250 YDLK 261
+D+K
Sbjct: 1195 FDVK 1198
>sp|P21231|POLG_SBMVN Genome polyprotein [Contains: P1 proteinase (N-terminal protein);
Helper component proteinase (HC-pro); Protein P3; 6 kDa
protein 1 (6K1); Cytoplasmic inclusion protein (CI); 6
kDa protein 2 (6K2); Viral genome-linked protein (VPg);
Nuclear inclusion protein A (NI-a) (NIa) (NIa-pro) (49
kDa proteinase) (49 kDa-Pro); Nuclear inclusion protein B
(NI-b) (NIb) (RNA-directed RNA polymerase); Coat protein
(CP)]
Length = 3066
Score = 34.3 bits (77), Expect = 0.46
Identities = 19/64 (29%), Positives = 34/64 (53%)
Frame = +1
Query: 70 NNSANVPTKIIEKSKTVISISNEHLSTCSSIKEEIETLLKDSGLPVSVENEINKEPKSVA 249
N ++ K++ K K S E + S +EI+++ +D L + + E NKE SV+
Sbjct: 1137 NERSDAVFKVLSKLKAFFSTMGEDVKVQSL--DEIQSIDEDKKLTIDFDLETNKESSSVS 1194
Query: 250 YDLK 261
+D+K
Sbjct: 1195 FDVK 1198
>sp|Q9NVL8|CN105_HUMAN Protein C14orf105
Length = 296
Score = 33.9 bits (76), Expect = 0.60
Identities = 43/178 (24%), Positives = 75/178 (42%), Gaps = 21/178 (11%)
Frame = +1
Query: 298 SIIKKPMPNRLRHLEPLQNPPLLTREKLI--RKLKSAEEKRKQMFIK*EKEILLS*YSSI 471
SIIK+ P RL+ LEP+ P ++T +L+ R+ ++ + ++ + K + + S
Sbjct: 91 SIIKRHPPQRLQKLEPIDLPRVITSGRLLSQREARTMHKAKQVLEKKMQTPMYTSENRQY 150
Query: 472 LFKTQNN*MFKK----ILELKRYSHSR-------PKTISSEQLLNT--QNNDIGKNQNFE 612
L K Q M +K +ELK+ H P+ +++ L + +N+D
Sbjct: 151 LHKMQVLEMIRKRQEAQMELKKSLHGEARINKQSPRDHKAKKTLQSTPRNDDHDLLTMLP 210
Query: 613 YDVXXXXXXXXXXXXXEKLQGNN------FRKMNMSFHQNENEMNLLKSASCSDIDEE 768
++ K Q N KM H+ E + LL +S SD DE+
Sbjct: 211 DEILNRGPGNSKDTEFLKHQAVNNCCPWKIGKMETWLHEQEAQGQLLWDSSSSDSDEQ 268
>sp|O66709|Y388_AQUAE Hypothetical protein AQ_388
Length = 301
Score = 33.9 bits (76), Expect = 0.60
Identities = 32/155 (20%), Positives = 75/155 (48%), Gaps = 24/155 (15%)
Frame = +1
Query: 58 KVNKNNSANVPTKIIEKSKTVISISNEHLSTCSSIKEEIETLLKDSGLPVSVENEIN--- 228
K +N + ++I E KT+++++ + + + TLL D+G+ ++ +NE++
Sbjct: 25 KTARNLEIKITSQIPEVYKTLLNLTKVKAKVLRN-RGNVITLLLDNGIEINAKNEMSVSL 83
Query: 229 KEPKSVAYDL--------KINDGDRIRTDVESIIKKPMPN-------RLRHLEPLQNPPL 363
+E +SV L K+ +G ++ +++K + N ++ + E +N +
Sbjct: 84 REGQSVVLTLVRENPLTFKLEEGKFVKNTTLEVLRKGLKNLKKFDFSQIENYENFKNSGI 143
Query: 364 LTREKLIRK-LKSAEEKRK-----QMFIK*EKEIL 450
K+++ +K++ + K + IK +KEIL
Sbjct: 144 FYENKVLKAIIKNSIDDLKVDLKYKALIKQDKEIL 178
>sp|P97577|FEZ1_RAT Fasciculation and elongation protein zeta 1 (Zygin-1) (Zygin I)
Length = 393
Score = 33.5 bits (75), Expect = 0.78
Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 21/165 (12%)
Frame = +1
Query: 94 KIIEKSKTVISISNEHLSTCSSIKEEIETLLKDSGLPVSVENEINKEPKSVAYDLKINDG 273
+ IEKS+ I+ E L T + EEIE ++++S +P+ L+ DG
Sbjct: 146 EFIEKSENDSGINEEPLLTADQVIEEIEEMMQNS-----------PDPEEEVEVLEEEDG 194
Query: 274 DRIRTDVESIIKKPMP------------NRLRHLEPLQNPPLLTR---------EKLIRK 390
I + +S++ + M LRH+ + LL + E+L+ +
Sbjct: 195 GEISSQADSVLLQEMQALTQTFNNNWSYEGLRHMSGSELTELLDQVEGAIRDFSEELVHQ 254
Query: 391 LKSAEEKRKQMFIK*EKEILLS*YSSILFKTQNN*MFKKILELKR 525
L +E ++ EKE+ S + ++L + QN ++ L KR
Sbjct: 255 LARRDE------LEFEKEVKNS-FITVLIEVQNKQKEQRELMKKR 292
>sp|P52322|RPOD_MICAE RNA polymerase sigma factor rpoD1
Length = 416
Score = 33.1 bits (74), Expect = 1.0
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +1
Query: 91 TKIIEKSKTVISISNEHLSTCSSIKEEIETLLKDSGLPVSVENEINKEPKSVAYDLKIND 270
TKI+ + E + E++ + K + LP+S+E I KE S D D
Sbjct: 272 TKILSQEMRRKPTEEEIATKMEMTIEKLRFIAKSAQLPISLETPIGKEEDSRLGDFIEAD 331
Query: 271 GDRIRTDV-ESIIKKPMPNRLRHLEPLQNPPLLTREKL-IRKLKSAEE 408
G+ +V ++++++ + N L L P + L R L ++K+ EE
Sbjct: 332 GETPEDEVSKNLLREDLENVLDTLSpreRDVLRLRYGLDDGRMKTLEE 379
>sp|Q8IWJ2|GCC2_HUMAN GRIP and coiled-coil domain-containing protein 2 (Golgi coiled coil
protein GCC185) (CTCL tumor antigen se1-1)
(CLL-associated antigen KW-11)
Length = 1583
Score = 32.7 bits (73), Expect = 1.3
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 3/129 (2%)
Frame = +1
Query: 67 KNNSANVPTKIIEKSKTVISISNEHLSTCSSIKEEIETLLKDSGLPVSVENEI-NKEPKS 243
K A+ ++ +K +T + + L T + ++ E E LL L +EN I N + K+
Sbjct: 408 KQQQASDVHELQQKLRTAFTEKDALLETVNRLQGENEKLLSQQELVPELENTIKNLQEKN 467
Query: 244 VAYDLKINDGDRIRTDVESIIKKPMPNRLRHLEPLQNPPLLTREK--LIRKLKSAEEKRK 417
Y L ++ D + ++E I LT EK I KLK++ E+
Sbjct: 468 GVYLLSLSQRDTMLKELEGKINS-----------------LTEEKDDFINKLKNSHEEMD 510
Query: 418 QMFIK*EKE 444
K E+E
Sbjct: 511 NFHKKCERE 519
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,814,152
Number of Sequences: 369166
Number of extensions: 1392559
Number of successful extensions: 4388
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4383
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)