Planaria EST Database


DrC_02955

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02955
         (642 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P02566|MYO4_CAEEL  Myosin-4 (Myosin heavy chain B) (MHC B...    35   0.21 
sp|P37709|TRHY_RABIT  Trichohyalin                                 34   0.28 
sp|P62290|ASPM_HYLLA  Abnormal spindle-like microcephaly-ass...    32   1.1  
sp|P62294|ASPM_PONPY  Abnormal spindle-like microcephaly-ass...    32   1.1  
sp|P62289|ASPM_GORGO  Abnormal spindle-like microcephaly-ass...    32   1.4  
sp|Q8IZT6|ASPM_HUMAN  Abnormal spindle-like microcephaly-ass...    32   1.4  
sp|P62293|ASPM_PANTR  Abnormal spindle-like microcephaly-ass...    32   1.4  
sp|Q15149|PLEC1_HUMAN  Plectin 1 (PLTN) (PCN) (Hemidesmosoma...    32   1.8  
sp|Q8CJ27|ASPM_MOUSE  Abnormal spindle-like microcephaly-ass...    31   2.4  
sp|Q6BSE2|ORC1_DEBHA  Origin recognition complex subunit 1         31   2.4  
>sp|P02566|MYO4_CAEEL Myosin-4 (Myosin heavy chain B) (MHC B) (Uncoordinated protein 54)
          Length = 1966

 Score = 34.7 bits (78), Expect = 0.21
 Identities = 40/176 (22%), Positives = 74/176 (42%), Gaps = 9/176 (5%)
 Frame = +2

Query: 71   DEAIRMVQIHERARQGRLRAKLMQEIRLQEDK---ERNAHTKSAQTMDFNEAALKIQRMW 241
            DEAI  +   E+  Q  +  KLM++++ +EDK   +     K  QT+D  E +L+ ++  
Sbjct: 998  DEAIAKLN-KEKKHQEEINRKLMEDLQSEEDKGNHQNKVKAKLEQTLDDLEDSLEREKRA 1056

Query: 242  RGILARRFVK-----KIKEEEFIWLGMTTPSV-SNASFKSAQLQRTLKIESDRRIKQAMF 403
            R  L ++  K     KI +E     G     + +N   K ++L        D +   +  
Sbjct: 1057 RADLDKQKRKVEGELKIAQENIDESGRQRHDLENNLKKKESELHSVSSRLEDEQALVSKL 1116

Query: 404  EQEYNQALVTIKDKIRETEGPDMNESMKDQIRQWFLESRDILGKFPDFPDEEEGGS 571
            +++       I +   E E    + S  D+ +       + LG+  D    E+GG+
Sbjct: 1117 QRQIKDGQSRISELEEELENERQSRSKADRAKSDLQRELEELGEKLD----EQGGA 1168
>sp|P37709|TRHY_RABIT Trichohyalin
          Length = 1407

 Score = 34.3 bits (77), Expect = 0.28
 Identities = 31/138 (22%), Positives = 59/138 (42%), Gaps = 5/138 (3%)
 Frame = +2

Query: 95  IHERARQGRLRAKLMQEIRLQEDKERNAHTKSAQTMDFNEAALKIQRMWR-----GILAR 259
           I E   + R + +L +E+R +E + R    +  + +   E  L  QR WR         R
Sbjct: 201 IEEEQLRRREQQELKRELREEEQQRRERREQHERALQEEEEQLLRQRRWREEpreQQQLR 260

Query: 260 RFVKKIKEEEFIWLGMTTPSVSNASFKSAQLQRTLKIESDRRIKQAMFEQEYNQALVTIK 439
           R +++I+E E          +     +  QL+R  ++E + R      EQ+  + L  I+
Sbjct: 261 RELEEIRERE--------QRLEQEERREQQLRREQRLEQEER-----REQQLRRELEEIR 307

Query: 440 DKIRETEGPDMNESMKDQ 493
           ++ +  E  +  E   +Q
Sbjct: 308 EREQRLEQEERREQRLEQ 325
>sp|P62290|ASPM_HYLLA Abnormal spindle-like microcephaly-associated protein homolog
          Length = 3477

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 15/84 (17%)
 Frame = +2

Query: 83   RMVQIHERARQGRLRAKLMQEIRLQEDKERNAHTKSA----QTMDFN-----------EA 217
            R++ + +  R  RL     ++ +L+ D +R+  T  A    Q+   N            A
Sbjct: 1259 RLLDLRKEIRAARLIQTTWRKYKLKTDLKRHQETDKAARIIQSAVINFLAKQRLRKRVNA 1318

Query: 218  ALKIQRMWRGILARRFVKKIKEEE 289
            AL IQ+ WR +LA+R +  +K+E+
Sbjct: 1319 ALVIQKYWRRVLAQRKLLMLKKEK 1342
>sp|P62294|ASPM_PONPY Abnormal spindle-like microcephaly-associated protein homolog
          Length = 3471

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 20/84 (23%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
 Frame = +2

Query: 83   RMVQIHERARQGRL------RAKLMQEIRLQEDKERNAHTKSAQTMDFN---------EA 217
            R++ + +  R  RL      + KL  +++  +++E+ A    +  ++F           A
Sbjct: 1253 RLLDLRKEIRAARLIQTTWRKYKLKTDLKRHQEREKAARIIQSAVINFLAKQRLRKRVNA 1312

Query: 218  ALKIQRMWRGILARRFVKKIKEEE 289
            AL +Q+ WR +LA+R +  +K+E+
Sbjct: 1313 ALVVQKYWRRVLAQRKLLMLKKEK 1336
>sp|P62289|ASPM_GORGO Abnormal spindle-like microcephaly-associated protein homolog
          Length = 3476

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
 Frame = +2

Query: 83   RMVQIHERARQGRL------RAKLMQEIRLQEDKERNAHTKSAQTMDFN---------EA 217
            R++ + +  R  RL      + KL  +++  +++E+ A       ++F           A
Sbjct: 1258 RLLDLRKEIRAARLIQTTWRKYKLKTDLKRHQEREKAARIIQLAVINFLAKQRLRKRVNA 1317

Query: 218  ALKIQRMWRGILARRFVKKIKEEE 289
            AL IQ+ WR +LA+R +  +K+E+
Sbjct: 1318 ALVIQKYWRRVLAQRKLLMLKKEK 1341
>sp|Q8IZT6|ASPM_HUMAN Abnormal spindle-like microcephaly-associated protein (Abnormal
            spindle protein homolog) (Asp homolog)
          Length = 3477

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
 Frame = +2

Query: 83   RMVQIHERARQGRL------RAKLMQEIRLQEDKERNAHTKSAQTMDFN---------EA 217
            R++ + +  R  RL      + KL  +++  +++E+ A       ++F           A
Sbjct: 1259 RLLDLRKEIRAARLIQTTWRKYKLKTDLKRHQEREKAARIIQLAVINFLAKQRLRKRVNA 1318

Query: 218  ALKIQRMWRGILARRFVKKIKEEE 289
            AL IQ+ WR +LA+R +  +K+E+
Sbjct: 1319 ALVIQKYWRRVLAQRKLLMLKKEK 1342
>sp|P62293|ASPM_PANTR Abnormal spindle-like microcephaly-associated protein homolog
          Length = 3477

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
 Frame = +2

Query: 83   RMVQIHERARQGRL------RAKLMQEIRLQEDKERNAHTKSAQTMDFN---------EA 217
            R++ + +  R  RL      + KL  +++  +++E+ A       ++F           A
Sbjct: 1259 RLLDLRKEIRAARLIQTTWRKYKLKTDLKRHQEREKAARIIQLAVINFLAKQRLRKRVNA 1318

Query: 218  ALKIQRMWRGILARRFVKKIKEEE 289
            AL IQ+ WR +LA+R +  +K+E+
Sbjct: 1319 ALVIQKYWRRVLAQRKLLMLKKEK 1342
>sp|Q15149|PLEC1_HUMAN Plectin 1 (PLTN) (PCN) (Hemidesmosomal protein 1) (HD1)
          Length = 4684

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 46/211 (21%), Positives = 90/211 (42%), Gaps = 36/211 (17%)
 Frame = +2

Query: 68   LDEAIRMVQIHERARQGRLRAKLMQEIRLQEDKERNAHTKSAQTMDFNEA---------- 217
            + EA R+    E  +Q +  A+  Q  RLQEDKE+ A   + +T  F             
Sbjct: 2456 VQEATRLKAEAELLQQQKELAQ-EQARRLQEDKEQMAQQLAEETQGFQRTLEAERQRQLE 2514

Query: 218  --------ALKIQRMWRGIL-----ARRFVKKIKEEEFIWLGMTTPSVSNASFKSAQLQR 358
                     L++  M R        A+RF K+ +E     +G        A+ +   L +
Sbjct: 2515 MSAEAERLKLRVAEMSRAQARAEEDAQRFRKQAEE-----IGEKLHRTELATQEKVTLVQ 2569

Query: 359  TLKIESDR------RIKQAMFEQEYNQALVTIKDKIRETEGPDMNESMKDQ-------IR 499
            TL+I+  +      R+++A+ E E  +  +  + K+ + +  +M    ++Q       ++
Sbjct: 2570 TLEIQRQQSDHDAERLREAIAELEREKEKLQQEAKLLQLKSEEMQTVQQEQLLQETQALQ 2629

Query: 500  QWFLESRDILGKFPDFPDEEEGGSLIIFKEK 592
            Q FL  +D L +   F ++E+     +F+++
Sbjct: 2630 QSFLSEKDSLLQRERFIEQEKAKLEQLFQDE 2660
>sp|Q8CJ27|ASPM_MOUSE Abnormal spindle-like microcephaly-associated protein homolog
            (Calmodulin-binding protein 1) (Spindle and hydroxyurea
            checkpoint abnormal protein) (Calmodulin-binding protein
            Sha1)
          Length = 3122

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
 Frame = +2

Query: 83   RMVQIHERARQGRL------RAKLMQEIRLQEDKERNAHTKSAQTMDFNE---------A 217
            R++ + +  R  RL      + KL ++++  +++++ A    +  ++F           A
Sbjct: 1227 RLLDLRKEIRAARLIQTTWRKYKLKRDLKHHQERDKAARVIQSVVLNFLSRRRLQKNVSA 1286

Query: 218  ALKIQRMWRGILARRFVKKIKEEE 289
            AL IQ+ WR + A+R ++ +K E+
Sbjct: 1287 ALVIQKCWRRVSAQRKLRMLKNEK 1310
>sp|Q6BSE2|ORC1_DEBHA Origin recognition complex subunit 1
          Length = 810

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
 Frame = +2

Query: 308 TTPSVSNASFKSAQLQR-TLKIESDR-RIKQAMF---EQEYNQALVTIKDKIRETEGPDM 472
           TTPS  +   KS   Q+ +LK E D   IK+  F   +Q+ N   V I  +I+       
Sbjct: 31  TTPSRRSRRGKSTSSQKISLKREEDELEIKEGDFLLVQQDNNSPEVAIVKEIKFG----- 85

Query: 473 NESMKDQIRQWFLESRDILGKFPDFPDEEE 562
           N++  D I  WF+  RDI  +  D P  EE
Sbjct: 86  NDNFLDIIVSWFIRMRDI--EEADLPKVEE 113
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,304,971
Number of Sequences: 369166
Number of extensions: 1026796
Number of successful extensions: 3103
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3094
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 5218718490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)