Planaria EST Database


DrC_02943

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02943
         (846 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5FQL0|KUP_GLUOX  Probable potassium transport system pro...    34   0.45 
sp|P48978|PGLR_MALDO  Polygalacturonase precursor (PG) (Pect...    32   2.2  
sp|Q09842|YAE1_SCHPO  Hypothetical PWWP domain protein C23D3.01    32   2.9  
sp|Q971T7|RGYR1_SULTO  Reverse gyrase 1 [Includes: Helicase ...    31   4.9  
sp|P05340|NIFU_AZOVI  Nitrogen fixation protein nifU               30   6.4  
>sp|Q5FQL0|KUP_GLUOX Probable potassium transport system protein kup
          Length = 675

 Score = 34.3 bits (77), Expect = 0.45
 Identities = 34/156 (21%), Positives = 64/156 (41%)
 Frame = +2

Query: 368 LCAPIQFKVSSIYLDKYRLTAMAIIIGKDAVLKARLTAENILKRVRAIMKALKIPDFSRC 547
           LC  +   V    + K++   +AI+ G   ++ +   + N+LK          IPD    
Sbjct: 429 LCTCVLAMVVFRRVFKWKSATVAIVFGFFFIVDSIFFSANVLK----------IPDGGWV 478

Query: 548 NISVVGGEDCYGALKNIAVSENVREAAIWIAVEHSDDKPLKILASEIAPAGTGMAPGLTV 727
            +++       G +  I ++   R  ++  A + +D  P+    + +  + T   PGL V
Sbjct: 479 PLAI-------GIISTIIMTTWKRGRSLIAARQQADSMPMGSFLARLPQSRTIRVPGLAV 531

Query: 728 LVGGRPKITPILKLHSSFIDKEKVKAIVQLNDENFD 835
            +   P I P   LH+   +K     I+ +  EN D
Sbjct: 532 FLTANPDIVPNSLLHNLKHNKVLHDHILFVTVENLD 567
>sp|P48978|PGLR_MALDO Polygalacturonase precursor (PG) (Pectinase)
          Length = 460

 Score = 32.0 bits (71), Expect = 2.2
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 379 NSIQGFLNIFGQVSINSHGNYHWKRCC-IKSSLNCGKYFKTCSCYN 513
           +++Q  L + G  +IN +GN  WK  C IK    CG Y  T   +N
Sbjct: 182 DNVQNLL-VVGPGTINGNGNIWWKNSCKIKPQPPCGTYAPTAVTFN 226
>sp|Q09842|YAE1_SCHPO Hypothetical PWWP domain protein C23D3.01
          Length = 407

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -2

Query: 689 RFPMQESLMVYHHYALPQSIWQLHEHFR*LQYFSMLHSNLLHRQH*YYIWKSL 531
           R+ +QE L+ Y+HY     +  +H+    ++ FS ++S LL     Y ++  L
Sbjct: 294 RYQLQEILLSYNHYPQESDMSHVHQILEMIENFSAINSELLESTKLYSLFTLL 346
>sp|Q971T7|RGYR1_SULTO Reverse gyrase 1 [Includes: Helicase ; Topoisomerase ]
          Length = 1156

 Score = 30.8 bits (68), Expect = 4.9
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
 Frame = +2

Query: 362 KGLCAPIQFKVSSIY-LDKYRLTAMAIIIGKDAVLKARLTAENILKRVRAIMKALKIPDF 538
           +GL  P + K    Y + K RL     +     ++K        +K +R  +  L  P+F
Sbjct: 369 RGLDEPKRLKYVIFYGIPKIRLNLTDALNNPSLIVKIGELLNIDVKDIRRKLLFLSPPEF 428

Query: 539 SRCNISVVGGEDCYGALKNIAVS-ENVREAAIWIAVEHSDDKPLK 670
                S++  E+  G LK+I V+  N++E  IW  ++  + K LK
Sbjct: 429 QILRYSLMKDEELSGKLKDIKVNLINIKE-KIWDVLKSDNIKKLK 472
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein nifU
          Length = 312

 Score = 30.4 bits (67), Expect = 6.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +2

Query: 563 GGEDCYGALKNIAVSENVREAAIWIAVEHSDDKPLKILASEIAPAGTGMAP 715
           G   C+ A++ +   E      +++A      K +K+LA E APA    AP
Sbjct: 171 GCSACHEAIERVLTEELAARGEVFVAAPIKAKKKVKVLAPEPAPAPVAEAP 221
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,221,829
Number of Sequences: 369166
Number of extensions: 1647475
Number of successful extensions: 5000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4999
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)