Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_027_E08
(846 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5FQL0|KUP_GLUOX Probable potassium transport system pro... 34 0.45
sp|P48978|PGLR_MALDO Polygalacturonase precursor (PG) (Pect... 32 2.2
sp|Q09842|YAE1_SCHPO Hypothetical PWWP domain protein C23D3.01 32 2.9
sp|Q971T7|RGYR1_SULTO Reverse gyrase 1 [Includes: Helicase ... 31 4.9
sp|P05340|NIFU_AZOVI Nitrogen fixation protein nifU 30 6.4
>sp|Q5FQL0|KUP_GLUOX Probable potassium transport system protein kup
Length = 675
Score = 34.3 bits (77), Expect = 0.45
Identities = 34/156 (21%), Positives = 64/156 (41%)
Frame = +2
Query: 368 LCAPIQFKVSSIYLDKYRLTAMAIIIGKDAVLKARLTAENILKRVRAIMKALKIPDFSRC 547
LC + V + K++ +AI+ G ++ + + N+LK IPD
Sbjct: 429 LCTCVLAMVVFRRVFKWKSATVAIVFGFFFIVDSIFFSANVLK----------IPDGGWV 478
Query: 548 NISVVGGEDCYGALKNIAVSENVREAAIWIAVEHSDDKPLKILASEIAPAGTGMAPGLTV 727
+++ G + I ++ R ++ A + +D P+ + + + T PGL V
Sbjct: 479 PLAI-------GIISTIIMTTWKRGRSLIAARQQADSMPMGSFLARLPQSRTIRVPGLAV 531
Query: 728 LVGGRPKITPILKLHSSFIDKEKVKAIVQLNDENFD 835
+ P I P LH+ +K I+ + EN D
Sbjct: 532 FLTANPDIVPNSLLHNLKHNKVLHDHILFVTVENLD 567
>sp|P48978|PGLR_MALDO Polygalacturonase precursor (PG) (Pectinase)
Length = 460
Score = 32.0 bits (71), Expect = 2.2
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +1
Query: 379 NSIQGFLNIFGQVSINSHGNYHWKRCC-IKSSLNCGKYFKTCSCYN 513
+++Q L + G +IN +GN WK C IK CG Y T +N
Sbjct: 182 DNVQNLL-VVGPGTINGNGNIWWKNSCKIKPQPPCGTYAPTAVTFN 226
>sp|Q09842|YAE1_SCHPO Hypothetical PWWP domain protein C23D3.01
Length = 407
Score = 31.6 bits (70), Expect = 2.9
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = -2
Query: 689 RFPMQESLMVYHHYALPQSIWQLHEHFR*LQYFSMLHSNLLHRQH*YYIWKSL 531
R+ +QE L+ Y+HY + +H+ ++ FS ++S LL Y ++ L
Sbjct: 294 RYQLQEILLSYNHYPQESDMSHVHQILEMIENFSAINSELLESTKLYSLFTLL 346
>sp|Q971T7|RGYR1_SULTO Reverse gyrase 1 [Includes: Helicase ; Topoisomerase ]
Length = 1156
Score = 30.8 bits (68), Expect = 4.9
Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)
Frame = +2
Query: 362 KGLCAPIQFKVSSIY-LDKYRLTAMAIIIGKDAVLKARLTAENILKRVRAIMKALKIPDF 538
+GL P + K Y + K RL + ++K +K +R + L P+F
Sbjct: 369 RGLDEPKRLKYVIFYGIPKIRLNLTDALNNPSLIVKIGELLNIDVKDIRRKLLFLSPPEF 428
Query: 539 SRCNISVVGGEDCYGALKNIAVS-ENVREAAIWIAVEHSDDKPLK 670
S++ E+ G LK+I V+ N++E IW ++ + K LK
Sbjct: 429 QILRYSLMKDEELSGKLKDIKVNLINIKE-KIWDVLKSDNIKKLK 472
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein nifU
Length = 312
Score = 30.4 bits (67), Expect = 6.4
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = +2
Query: 563 GGEDCYGALKNIAVSENVREAAIWIAVEHSDDKPLKILASEIAPAGTGMAP 715
G C+ A++ + E +++A K +K+LA E APA AP
Sbjct: 171 GCSACHEAIERVLTEELAARGEVFVAAPIKAKKKVKVLAPEPAPAPVAEAP 221
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,221,829
Number of Sequences: 369166
Number of extensions: 1647475
Number of successful extensions: 5000
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4999
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8293644780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)