Planaria EST Database


DrC_02941

BLASTX 2.2.13 [Nov-27-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DrC_02941
         (376 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P15615|YM14_PARTE  Hypothetical 47.2 kDa protein (ORF14)        29   3.8  
sp|Q9ZKG7|Y415_HELPJ  Hypothetical UPF0003 protein JHP0969         29   3.8  
sp|O25170|Y415_HELPY  Hypothetical UPF0003 protein HP0415          29   3.8  
sp|P56654|CPZ2_MOUSE  Cytochrome P450 2C37 (CYPIIC37)              28   5.0  
sp|P15331|PERI_MOUSE  Peripherin                                   28   8.5  
sp|P33260|CP2CI_HUMAN  Cytochrome P450 2C18 (CYPIIC18) (P450...    28   8.5  
sp|P41219|PERI_HUMAN  Peripherin                                   28   8.5  
sp|P20678|CP2H2_CHICK  Cytochrome P450 2H2 (CYPIIH2) (P450 P...    28   8.5  
sp|P21807|PERI_RAT  Peripherin                                     28   8.5  
sp|P06754|TPM1_DROME  Tropomyosin 1, isoforms 9A/A/B (Tropom...    28   8.5  
>sp|P15615|YM14_PARTE Hypothetical 47.2 kDa protein (ORF14)
          Length = 387

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 209 KYLKS*HYQSYLNFFFFK*ITAKVIYILTGWRIFS 105
           KY +   Y  +  FFFFK I  K+I+    + +FS
Sbjct: 12  KYSREFSYHFFGKFFFFKEINTKLIFFFERFNLFS 46
>sp|Q9ZKG7|Y415_HELPJ Hypothetical UPF0003 protein JHP0969
          Length = 623

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
 Frame = -3

Query: 368 RNNLFVFL-----SIINILKFQFSKTI 303
           +NNLFVFL     S INIL + FSKT+
Sbjct: 547 KNNLFVFLDQFADSSINILVYCFSKTV 573
>sp|O25170|Y415_HELPY Hypothetical UPF0003 protein HP0415
          Length = 623

 Score = 28.9 bits (63), Expect = 3.8
 Identities = 16/27 (59%), Positives = 19/27 (70%), Gaps = 5/27 (18%)
 Frame = -3

Query: 368 RNNLFVFL-----SIINILKFQFSKTI 303
           +NNLFVFL     S INIL + FSKT+
Sbjct: 547 KNNLFVFLDQFADSSINILVYCFSKTV 573
>sp|P56654|CPZ2_MOUSE Cytochrome P450 2C37 (CYPIIC37)
          Length = 490

 Score = 28.5 bits (62), Expect = 5.0
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 152 ITAKVIYILTGWRIFSCRGKGPSGKAPSRVVG 57
           +T   +++L+ WR  S RGK P G  P  ++G
Sbjct: 9   LTLSCLFLLSLWRQSSERGKLPPGPTPLPIIG 40
>sp|P15331|PERI_MOUSE Peripherin
          Length = 475

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   LEAKVRQLKEEHERTLQECQQLWKELCRLD 91
           LE ++RQLKEE  R L+E Q+L      LD
Sbjct: 365 LEEELRQLKEEMARHLREYQELLNVKMALD 394
>sp|P33260|CP2CI_HUMAN Cytochrome P450 2C18 (CYPIIC18) (P450-6B/29C)
          Length = 490

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -3

Query: 137 IYILTGWRIFSCRGKGPSGKAPSRVVG 57
           +++L+ WR  S RG+ PSG  P  ++G
Sbjct: 14  LFLLSLWRQSSGRGRLPSGPTPLPIIG 40
>sp|P41219|PERI_HUMAN Peripherin
          Length = 471

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   LEAKVRQLKEEHERTLQECQQLWKELCRLD 91
           LE ++RQLKEE  R L+E Q+L      LD
Sbjct: 361 LEEELRQLKEEMARHLREYQELLNVKMALD 390
>sp|P20678|CP2H2_CHICK Cytochrome P450 2H2 (CYPIIH2) (P450 PCHP7)
          Length = 491

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 134 YILTGWRIFSCRGKGPSGKAPSRVVG 57
           +++  WR  S RGK P G  P  ++G
Sbjct: 18  FLIAAWRSTSQRGKEPPGPTPIPIIG 43
>sp|P21807|PERI_RAT Peripherin
          Length = 468

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   LEAKVRQLKEEHERTLQECQQLWKELCRLD 91
           LE ++RQLKEE  R L+E Q+L      LD
Sbjct: 358 LEEELRQLKEEMARHLREYQELLNVKMALD 387
>sp|P06754|TPM1_DROME Tropomyosin 1, isoforms 9A/A/B (Tropomyosin II) (Cytoskeletal
           tropomyosin)
          Length = 339

 Score = 27.7 bits (60), Expect = 8.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 2   LEAKVRQLKEEHERTLQECQQLWKEL 79
           L+ K+RQ KEE E+   EC++  K L
Sbjct: 100 LKKKMRQTKEEMEKYKDECEEFHKRL 125
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,940,144
Number of Sequences: 369166
Number of extensions: 704800
Number of successful extensions: 1663
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1663
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)